CRAN Package Check Results for Package bayesMCClust

Last updated on 2015-09-06 23:47:16.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.0	1.50	35.89	37.38	NOTE
r-devel-linux-x86_64-debian-gcc	1.0	1.40	36.41	37.80	NOTE
r-devel-linux-x86_64-fedora-clang	1.0			71.12	NOTE
r-devel-linux-x86_64-fedora-gcc	1.0			69.14	NOTE
r-devel-osx-x86_64-clang	1.0			60.48	NOTE
r-devel-windows-ix86+x86_64	1.0	6.00	67.00	73.00	NOTE
r-patched-linux-x86_64	1.0	1.55	36.60	38.15	NOTE
r-patched-solaris-sparc	1.0			484.70	NOTE
r-patched-solaris-x86	1.0			95.90	NOTE
r-release-linux-x86_64	1.0	1.52	37.88	39.40	NOTE
r-release-osx-x86_64-mavericks	1.0				NOTE
r-release-windows-ix86+x86_64	1.0	7.00	92.00	99.00	NOTE
r-oldrel-windows-ix86+x86_64	1.0	13.00	75.00	88.00	NOTE

Check Details

Version: 1.0
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘gplots’ ‘xtable’ ‘mnormt’ ‘MASS’ ‘bayesm’ ‘boa’ ‘e1071’ ‘gtools’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘bayesm’ ‘boa’ ‘e1071’ ‘gplots’ ‘gtools’ ‘mnormt’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    calcMSCritDMC: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    calcMSCritDMCExt: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    calcMSCritMCC: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    calcMSCritMCCExt: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    MNLAuxMix: no visible global function definition for ‘runif’
    MNLAuxMix: no visible global function definition for ‘mvrnorm’
    MNLAuxMix: no visible global function definition for ‘flush.console’
    calcAllocationsDMC: no visible global function definition for
     ‘flush.console’
    calcAllocationsDMC: no visible global function definition for ‘dev.new’
    calcAllocationsDMC: no visible global function definition for ‘par’
    calcAllocationsDMC: no visible global function definition for ‘matplot’
    calcAllocationsDMC: no visible global function definition for ‘axis’
    calcAllocationsDMCExt: no visible global function definition for
     ‘flush.console’
    calcAllocationsMCC: no visible global function definition for
     ‘flush.console’
    calcAllocationsMCC: no visible global function definition for ‘dev.new’
    calcAllocationsMCC: no visible global function definition for ‘par’
    calcAllocationsMCC: no visible global function definition for ‘matplot’
    calcAllocationsMCC: no visible global function definition for ‘axis’
    calcAllocationsMCCExt: no visible global function definition for
     ‘flush.console’
    calcAllocationsMNL: no visible global function definition for
     ‘flush.console’
    calcEntropy: no visible global function definition for ‘xtable’
    calcEquiDist: no visible global function definition for ‘xtable’
    calcEquiDist: no visible global function definition for ‘dev.new’
    calcEquiDist: no visible global function definition for ‘par’
    calcEquiDist: no visible global function definition for ‘barplot2’
    calcEquiDist: no visible global function definition for ‘rainbow’
    calcLongRunDist: no visible global function definition for ‘dev.new’
    calcLongRunDist: no visible global function definition for ‘par’
    calcLongRunDist: no visible global function definition for ‘barplot2’
    calcLongRunDist: no visible global function definition for ‘rainbow’
    calcLongRunDist: no visible global function definition for ‘xtable’
    calcMSCritDMC: no visible global function definition for
     ‘flush.console’
    calcMSCritDMC: no visible global function definition for ‘postscript’
    calcMSCritDMC: no visible global function definition for ‘par’
    calcMSCritDMC: no visible global function definition for ‘plot’
    calcMSCritDMC: no visible global function definition for ‘mtext’
    calcMSCritDMC: no visible global function definition for ‘dev.off’
    calcMSCritDMC: no visible global function definition for ‘pdf’
    calcMSCritDMCExt: no visible global function definition for
     ‘flush.console’
    calcMSCritDMCExt: no visible global function definition for
     ‘postscript’
    calcMSCritDMCExt: no visible global function definition for ‘par’
    calcMSCritDMCExt: no visible global function definition for ‘plot’
    calcMSCritDMCExt: no visible global function definition for ‘mtext’
    calcMSCritDMCExt: no visible global function definition for ‘dev.off’
    calcMSCritDMCExt: no visible global function definition for ‘pdf’
    calcMSCritMCC: no visible global function definition for
     ‘flush.console’
    calcMSCritMCC: no visible global function definition for ‘postscript’
    calcMSCritMCC: no visible global function definition for ‘par’
    calcMSCritMCC: no visible global function definition for ‘plot’
    calcMSCritMCC: no visible global function definition for ‘mtext’
    calcMSCritMCC: no visible global function definition for ‘dev.off’
    calcMSCritMCC: no visible global function definition for ‘pdf’
    calcMSCritMCCExt: no visible global function definition for ‘cov’
    calcMSCritMCCExt: no visible global function definition for ‘rmnorm’
    calcMSCritMCCExt: no visible global function definition for ‘dmnorm’
    calcMSCritMCCExt: no visible global function definition for
     ‘flush.console’
    calcMSCritMCCExt: no visible global function definition for
     ‘postscript’
    calcMSCritMCCExt: no visible global function definition for ‘par’
    calcMSCritMCCExt: no visible global function definition for ‘plot’
    calcMSCritMCCExt: no visible global function definition for ‘mtext’
    calcMSCritMCCExt: no visible global function definition for ‘dev.off’
    calcMSCritMCCExt: no visible global function definition for ‘pdf’
    calcNumEff : <anonymous>: no visible global function definition for
     ‘numEff’
    calcNumEff: no visible global function definition for ‘xtable’
    calcParMatDMC: no visible global function definition for ‘xtable’
    calcRegCoeffs: no visible binding for global variable ‘sd’
    calcRegCoeffs: no visible binding for global variable ‘boa.hpd’
    calcRegCoeffs: no visible global function definition for ‘xtable’
    calcRegCoeffs: no visible global function definition for ‘dev.new’
    calcRegCoeffs: no visible global function definition for ‘par’
    calcRegCoeffs: no visible global function definition for ‘matplot’
    calcRegCoeffs: no visible global function definition for ‘acf’
    calcRegCoeffs: no visible global function definition for ‘mtext’
    calcSegmentationPower: no visible global function definition for
     ‘xtable’
    calcTransProbs: no visible binding for global variable ‘sd’
    calcTransProbs: no visible global function definition for ‘xtable’
    calcTransProbs: no visible global function definition for ‘dev.new’
    calcTransProbs: no visible global function definition for ‘par’
    calcTransProbs: no visible global function definition for ‘plot’
    calcTransProbs: no visible global function definition for ‘axis’
    calcTransProbs: no visible global function definition for ‘lines’
    calcVariationDMC: no visible global function definition for ‘xtable’
    calcVariationDMC: no visible binding for global variable ‘sd’
    dmClust : ehjUpdate_k: no visible global function definition for
     ‘rbinom’
    dmClust : priorDens: no visible global function definition for
     ‘dnbinom’
    dmClust : monitor_e_h: no visible global function definition for ‘plot’
    dmClust : monitor_e_h: no visible global function definition for
     ‘lines’
    dmClust : monitor_xi_h: no visible global function definition for
     ‘plot’
    dmClust : monitor_xi_h: no visible global function definition for
     ‘lines’
    dmClust: no visible global function definition for ‘flush.console’
    dmClust: no visible global function definition for ‘rmultinom’
    dmClust: no visible global function definition for ‘dev.new’
    dmClust: no visible global function definition for ‘par’
    dmClust: no visible global function definition for ‘dev.cur’
    dmClust: no visible global function definition for ‘ddirichlet’
    dmClust: no visible global function definition for ‘dev.set’
    dmClustExtended : ehjUpdate_k: no visible global function definition
     for ‘rbinom’
    dmClustExtended : priorDens: no visible global function definition for
     ‘dnbinom’
    dmClustExtended : monitor_e_h: no visible global function definition
     for ‘plot’
    dmClustExtended : monitor_e_h: no visible global function definition
     for ‘lines’
    dmClustExtended : monitor_xi_h: no visible global function definition
     for ‘plot’
    dmClustExtended : monitor_xi_h: no visible global function definition
     for ‘lines’
    dmClustExtended: no visible global function definition for
     ‘flush.console’
    dmClustExtended: no visible global function definition for ‘runif’
    dmClustExtended: no visible global function definition for ‘mvrnorm’
    dmClustExtended: no visible global function definition for ‘rmultinom’
    dmClustExtended: no visible global function definition for ‘dev.new’
    dmClustExtended: no visible global function definition for ‘par’
    dmClustExtended: no visible global function definition for ‘dev.cur’
    dmClustExtended: no visible global function definition for ‘dnorm’
    dmClustExtended: no visible global function definition for ‘dev.set’
    mcClust : dirDensFun: no visible global function definition for
     ‘ddirichlet’
    mcClust: no visible global function definition for ‘runif’
    mcClust: no visible global function definition for ‘ddirichlet’
    mcClust: no visible global function definition for ‘flush.console’
    mcClustExtended : dirDensFun: no visible global function definition for
     ‘ddirichlet’
    mcClustExtended: no visible global function definition for ‘runif’
    mcClustExtended: no visible global function definition for ‘mvrnorm’
    mcClustExtended: no visible global function definition for ‘dnorm’
    mcClustExtended: no visible global function definition for
     ‘flush.console’
    plotLikeliPaths: no visible global function definition for ‘dev.new’
    plotLikeliPaths: no visible global function definition for ‘par’
    plotLikeliPaths: no visible global function definition for ‘plot’
    plotLikeliPaths: no visible global function definition for ‘abline’
    plotScatter: no visible global function definition for ‘dev.new’
    plotScatter: no visible global function definition for ‘par’
    plotScatter: no visible global function definition for ‘plot’
    plotScatter: no visible global function definition for ‘points’
    plotTransProbs: no visible global function definition for ‘dev.new’
    plotTransProbs: no visible global function definition for ‘par’
    plotTransProbs : <anonymous>: no visible global function definition for
     ‘balloonplot’
    plotTransProbs : <anonymous>: no visible global function definition for
     ‘strwidth’
    plotTransProbs : <anonymous>: no visible global function definition for
     ‘strheight’
    plotTransProbs: no visible global function definition for ‘balloonplot’
    plotTransProbs: no visible global function definition for ‘strwidth’
    plotTransProbs: no visible global function definition for ‘strheight’
    plotTransProbs: no visible global function definition for ‘xtable’
    plotTypicalMembers: no visible global function definition for ‘dev.new’
    plotTypicalMembers: no visible global function definition for ‘par’
    plotTypicalMembers: no visible global function definition for ‘plot’
    plotTypicalMembers: no visible global function definition for ‘axis’
    Undefined global functions or variables:
     abline acf axis balloonplot barplot2 boa.hpd cov ddirichlet dev.cur
     dev.new dev.off dev.set dmnorm dnbinom dnorm flush.console lines
     matplot mtext mvrnorm numEff par pdf plot points postscript rainbow
     rbinom rmnorm rmultinom runif sd strheight strwidth xtable
    Consider adding
     importFrom("grDevices", "dev.cur", "dev.new", "dev.off", "dev.set",
     "pdf", "postscript", "rainbow")
     importFrom("graphics", "abline", "axis", "lines", "matplot", "mtext",
     "par", "plot", "points", "strheight", "strwidth")
     importFrom("stats", "acf", "cov", "dnbinom", "dnorm", "rbinom",
     "rmultinom", "runif", "sd")
     importFrom("utils", "flush.console")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'MNLAuxMix.Rd':
     \examples lines wider than 100 characters:
     X = cbind( intercept=1, alrateBezNew, unskilled, skilled, angStart ) ),

    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    calcMSCritDMC: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
    calcMSCritDMCExt: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
    calcMSCritMCC: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
    calcMSCritMCCExt: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
    MNLAuxMix: no visible global function definition for ‘mvrnorm’
    calcEntropy: no visible global function definition for ‘xtable’
    calcEquiDist: no visible global function definition for ‘xtable’
    calcEquiDist: no visible global function definition for ‘barplot2’
    calcLongRunDist: no visible global function definition for ‘barplot2’
    calcLongRunDist: no visible global function definition for ‘xtable’
    calcMSCritMCCExt: no visible global function definition for ‘rmnorm’
    calcMSCritMCCExt: no visible global function definition for ‘dmnorm’
    calcNumEff : <anonymous>: no visible global function definition for
     ‘numEff’
    calcNumEff: no visible global function definition for ‘xtable’
    calcParMatDMC: no visible global function definition for ‘xtable’
    calcRegCoeffs: no visible binding for global variable ‘boa.hpd’
    calcRegCoeffs: no visible global function definition for ‘xtable’
    calcSegmentationPower: no visible global function definition for
     ‘xtable’
    calcTransProbs: no visible global function definition for ‘xtable’
    calcVariationDMC: no visible global function definition for ‘xtable’
    dmClust: no visible global function definition for ‘ddirichlet’
    dmClustExtended: no visible global function definition for ‘mvrnorm’
    mcClust : dirDensFun: no visible global function definition for
     ‘ddirichlet’
    mcClust: no visible global function definition for ‘ddirichlet’
    mcClustExtended : dirDensFun: no visible global function definition for
     ‘ddirichlet’
    mcClustExtended: no visible global function definition for ‘mvrnorm’
    plotTransProbs : <anonymous>: no visible global function definition for
     ‘balloonplot’
    plotTransProbs: no visible global function definition for ‘balloonplot’
    plotTransProbs: no visible global function definition for ‘xtable’
    Undefined global functions or variables:
     balloonplot barplot2 boa.hpd ddirichlet dmnorm mvrnorm numEff rmnorm
     xtable
Flavor: r-devel-osx-x86_64-clang