CRAN Package Check Results for Package poplite

Last updated on 2015-09-06 23:47:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.99.16 1.71 42.58 44.28 NOTE
r-devel-linux-x86_64-debian-gcc 0.99.16 1.36 41.08 42.44 NOTE
r-devel-linux-x86_64-fedora-clang 0.99.16 87.05 NOTE
r-devel-linux-x86_64-fedora-gcc 0.99.16 84.43 NOTE
r-devel-osx-x86_64-clang 0.99.16 75.60 NOTE
r-devel-windows-ix86+x86_64 0.99.16 5.00 113.00 118.00 NOTE
r-patched-linux-x86_64 0.99.16 1.47 43.54 45.01 NOTE
r-patched-solaris-sparc 0.99.16 576.60 NOTE
r-patched-solaris-x86 0.99.16 122.70 NOTE
r-release-linux-x86_64 0.99.16 1.45 44.47 45.92 NOTE
r-release-osx-x86_64-mavericks 0.99.16 WARN
r-release-windows-ix86+x86_64 0.99.16 9.00 72.00 81.00 NOTE
r-oldrel-windows-ix86+x86_64 0.99.16 14.00 93.00 107.00 NOTE

Check Details

Version: 0.99.16
Check: R code for possible problems
Result: NOTE
    filter_.Database: no visible global function definition for ‘stack’
    get.starting.point : <anonymous>: no visible global function definition
     for ‘na.omit’
    select_.Database: no visible global function definition for ‘stack’
    tsl.to.graph: no visible global function definition for ‘stack’
    join,Database: no visible global function definition for ‘stack’
    join,Database : .get.select.cols: no visible global function definition
     for ‘setNames’
    join,Database: no visible binding for global variable ‘new.ancil’
    join,Database: no visible global function definition for ‘setNames’
    Undefined global functions or variables:
     na.omit new.ancil setNames stack
    Consider adding
     importFrom("stats", "na.omit", "setNames")
     importFrom("utils", "stack")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.99.16
Check: R code for possible problems
Result: NOTE
    join,Database: no visible binding for global variable ‘new.ancil’
    Undefined global functions or variables:
     new.ancil
Flavor: r-devel-osx-x86_64-clang

Version: 0.99.16
Check: R code for possible problems
Result: NOTE
    join,Database : .local: no visible binding for global variable
     ‘new.ancil’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.99.16
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘VariantAnnotation’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.99.16
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘poplite.Rnw’
     ...
    8 8 8 18 0 1.6844357 0.53539884 2 F
    9 9 9 20 1 0.9113913 -0.55527835 2 F
    10 10 10 12 1 0.2374303 1.77950291 1 M
    .. ... ... ... ... ... ... ... ...
    
    > library(VariantAnnotation)
    
     When sourcing ‘poplite.R’:
    Error: there is no package called ‘VariantAnnotation’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.99.16
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
     select
    
    The following object is masked from ‘package:stats’:
    
     filter
    
    Error in makeSchemaFromData(dna, "dna") :
     ERROR: The names of the supplied data.frame need to be modified for the database see correct.df.names
    Starting clinical
    Starting samples
    Starting dna
    Error in filter_.Database(.data, .dots = lazyeval::lazy_dots(...)) :
     ERROR: Cannot uniquely map columns to table, try using: tableX.columnY
    Loading required package: DBI
    Starting gender
    Starting clinical
    Starting samples
    Starting dna
    
    Error: processing vignette 'poplite.Rnw' failed with diagnostics:
     chunk 15
    Error in library(VariantAnnotation) :
     there is no package called ‘VariantAnnotation’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks