CRAN Package Check Results for Package secr

Last updated on 2015-09-06 23:47:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.9.5 24.92 240.83 265.75 NOTE
r-devel-linux-x86_64-debian-gcc 2.9.5 26.38 247.58 273.97 NOTE
r-devel-linux-x86_64-fedora-clang 2.9.5 524.52 NOTE
r-devel-linux-x86_64-fedora-gcc 2.9.5 520.47 NOTE
r-devel-osx-x86_64-clang 2.9.5 336.53 OK
r-devel-windows-ix86+x86_64 2.9.5 63.00 559.00 622.00 NOTE
r-patched-linux-x86_64 2.9.5 26.46 249.90 276.36 OK
r-patched-solaris-sparc 2.9.5 2612.90 OK --no-examples
r-patched-solaris-x86 2.9.5 654.00 OK
r-release-linux-x86_64 2.9.5 26.76 253.13 279.90 OK
r-release-osx-x86_64-mavericks 2.9.5 OK
r-release-windows-ix86+x86_64 2.9.5 79.00 578.00 657.00 OK
r-oldrel-windows-ix86+x86_64 2.9.5 82.00 638.00 720.00 OK

Check Details

Version: 2.9.5
Check: R code for possible problems
Result: NOTE
    AIC.secr: no visible global function definition for ‘AIC’
    ARL : MMDMxy: no visible global function definition for ‘dist’
    ARL: no visible global function definition for ‘coef’
    ARL: no visible global function definition for ‘nls’
    ARL: no visible global function definition for ‘lines’
    BSS: no visible global function definition for ‘pnorm’
    CG: no visible global function definition for ‘pgamma’
    CLN: no visible global function definition for ‘plnorm’
    CV: no visible global function definition for ‘sd’
    CVa: no visible global function definition for ‘predict’
    CVa0: no visible global function definition for ‘predict’
    HCG: no visible global function definition for ‘pgamma’
    LLsurface.secr: no visible global function definition for ‘coef’
    LLsurface.secr: no visible global function definition for
     ‘flush.console’
    LLsurface.secr: no visible global function definition for ‘contour’
    LLsurface.secr: no visible global function definition for ‘points’
    LN.interval: no visible global function definition for ‘qnorm’
    LR.test: no visible global function definition for ‘getS3method’
    LR.test: no visible global function definition for ‘logLik’
    LR.test: no visible global function definition for ‘pchisq’
    M0: no visible global function definition for ‘optimize’
    MATA : fn: no visible global function definition for ‘pnorm’
    MATA: no visible global function definition for ‘uniroot’
    MMDM : MMDMxy: no visible global function definition for ‘dist’
    MMDM : SE: no visible global function definition for ‘var’
    Mb: no visible global function definition for ‘optimize’
    Mh2.est: no visible global function definition for ‘nlm’
    Mhbeta.est: no visible global function definition for ‘nlm’
    N.Mt: no visible global function definition for ‘optimize’
    PG : inpoly: no visible global function definition for ‘points’
    SN: no visible global function definition for ‘pnorm’
    SNS: no visible global function definition for ‘pnorm’
    SS: no visible global function definition for ‘pnorm’
    SSS: no visible global function definition for ‘pnorm’
    add.cl: no visible global function definition for ‘qnorm’
    attenuationplot : aline: no visible global function definition for
     ‘lines’
    autoini: no visible global function definition for ‘runif’
    autoini: no visible global function definition for ‘uniroot’
    badsmooths: no visible global function definition for ‘terms’
    bias.D : gr: no visible global function definition for ‘plnorm’
    bias.D : gr: no visible global function definition for ‘pgamma’
    bias.D : gr: no visible global function definition for ‘pnorm’
    bias.D : integrand1: no visible global function definition for
     ‘predict’
    bias.D : integrand2: no visible global function definition for
     ‘predict’
    bias.D: no visible global function definition for ‘nls’
    bias.D: no visible global function definition for ‘coef’
    bias.D: no visible global function definition for ‘smooth.spline’
    bias.D: no visible global function definition for ‘approxfun’
    bias.D: no visible global function definition for ‘integrate’
    bias.D : <anonymous>: no visible global function definition for
     ‘integrate’
    buffer.contour : oneconvexbuffer: no visible global function definition
     for ‘chull’
    buffer.contour : oneconvexbuffer: no visible global function definition
     for ‘lines’
    buffer.contour: no visible global function definition for ‘contour’
    buffer.contour: no visible global function definition for
     ‘.filled.contour’
    buffer.contour: no visible global function definition for
     ‘contourLines’
    circular.p: no visible global function definition for ‘integrate’
    circular.p : fnr: no visible global function definition for ‘integrate’
    circular.r : getroot: no visible global function definition for
     ‘uniroot’
    circular.r: no visible global function definition for ‘integrate’
    circular.r : fnr: no visible global function definition for ‘integrate’
    clone.capthist: no visible global function definition for ‘rpois’
    clone.capthist: no visible global function definition for ‘rnbinom’
    clone.default: no visible global function definition for ‘rpois’
    clone.default: no visible global function definition for ‘rnbinom’
    clone.popn: no visible global function definition for ‘rpois’
    clone.popn: no visible global function definition for ‘rnbinom’
    closure.test : chisq: no visible global function definition for
     ‘chisq.test’
    closure.test: no visible global function definition for ‘pnorm’
    closure.test: no visible global function definition for ‘pchisq’
    coef.secr: no visible global function definition for ‘qnorm’
    collate: no visible global function definition for ‘qnorm’
    collate: no visible binding for global variable ‘coef’
    confint.secr : profileInterval : profileLL.lagrange: no visible global
     function definition for ‘optim’
    confint.secr : profileInterval: no visible global function definition
     for ‘coef’
    confint.secr : profileInterval: no visible global function definition
     for ‘predict’
    confint.secr : profileInterval: no visible global function definition
     for ‘qchisq’
    confint.secr : profileInterval: no visible global function definition
     for ‘uniroot’
    confint.secr: no visible global function definition for ‘qchisq’
    darr.est.c: no visible global function definition for ‘optimize’
    deleteMaskPoints: no visible global function definition for
     ‘flush.console’
    deleteMaskPoints: no visible global function definition for ‘locator’
    deleteMaskPoints: no visible global function definition for ‘points’
    detectfnplot : gline: no visible global function definition for ‘par’
    detectfnplot : gline: no visible global function definition for
     ‘segments’
    detectfnplot : gline: no visible global function definition for ‘lines’
    detectpar.secr: no visible global function definition for ‘predict’
    distancetotrap : trpi : intrp: no visible global function definition
     for ‘approx’
    ellipse.bvn: no visible global function definition for ‘var’
    ellipse.bvn: no visible global function definition for ‘qchisq’
    ellipse.bvn: no visible global function definition for ‘polygon’
    ellipse.secr: no visible global function definition for ‘palette’
    ellipse.secr: no visible global function definition for ‘vcov’
    ellipse.secr: no visible global function definition for ‘coef’
    ellipse.secr: no visible global function definition for ‘qchisq’
    ellipse.secr: no visible global function definition for ‘lines’
    ellipse.secr: no visible global function definition for ‘points’
    esa: no visible global function definition for ‘coef’
    esa.plot: no visible global function definition for ‘lines’
    esa.plot.secr: no visible global function definition for ‘par’
    expected.n: no visible global function definition for ‘predict’
    extract.estimates: no visible binding for global variable ‘predict’
    fxi.contour : fxi: no visible global function definition for ‘approx’
    fxi.contour : fxi: no visible global function definition for
     ‘contourLines’
    fxi.contour : fxi: no visible global function definition for ‘contour’
    fxi.contour : fxi: no visible global function definition for
     ‘.filled.contour’
    fxi.contour : fxi: no visible global function definition for ‘points’
    fxi.mode: no visible global function definition for ‘nlm’
    fxi.secr: no visible global function definition for ‘coef’
    gamsetup: no visible global function definition for ‘update.formula’
    general.model.matrix: no visible global function definition for
     ‘model.matrix’
    getMeanSD : MeanSD: no visible global function definition for ‘sd’
    inflatechull: no visible global function definition for ‘chull’
    ip.secr: no visible global function definition for ‘flush.console’
    ip.secr: no visible global function definition for ‘lm’
    ip.secr: no visible global function definition for ‘coef’
    ip.secr: no visible global function definition for ‘var’
    ip.secr : <anonymous>: no visible global function definition for ‘sd’
    jack.est: no visible global function definition for ‘pchisq’
    jackknife.est: no visible global function definition for ‘pchisq’
    make.systematic: no visible global function definition for ‘runif’
    mask.check: no visible global function definition for ‘predict’
    mask.check : sfit: no visible global function definition for ‘predict’
    mask.check: no visible global function definition for ‘flush.console’
    memo: no visible global function definition for ‘flush.console’
    merge.capthist : check: no visible global function definition for ‘is’
    merge.capthist: no visible global function definition for ‘dist’
    mindistfromedge: no visible global function definition for ‘chull’
    model.average: no visible global function definition for ‘AIC’
    model.average : <anonymous>: no visible global function definition for
     ‘coef’
    model.average : <anonymous>: no visible global function definition for
     ‘vcov’
    model.average: no visible binding for global variable ‘vcov’
    model.average: no visible global function definition for ‘qnorm’
    naivesigma: no visible global function definition for ‘uniroot’
    null.est.c: no visible global function definition for ‘optimize’
    pdot.contour: no visible global function definition for ‘contour’
    pdot.contour: no visible global function definition for
     ‘.filled.contour’
    pdot.contour: no visible global function definition for ‘contourLines’
    plot.Dsurface: no visible global function definition for ‘contour’
    plot.Dsurface: no visible global function definition for ‘persp’
    plot.Rsurface: no visible global function definition for ‘contour’
    plot.Rsurface: no visible global function definition for ‘persp’
    plot.capthist : plotprox: no visible global function definition for
     ‘par’
    plot.capthist : plotprox: no visible global function definition for
     ‘lines’
    plot.capthist : plotprox: no visible global function definition for
     ‘points’
    plot.capthist : plotpolygoncapt: no visible global function definition
     for ‘par’
    plot.capthist : plotpolygoncapt: no visible global function definition
     for ‘lines’
    plot.capthist : plotpolygoncapt: no visible global function definition
     for ‘points’
    plot.capthist : plotcapt: no visible global function definition for
     ‘par’
    plot.capthist : plotcapt: no visible global function definition for
     ‘lines’
    plot.capthist : plotcapt: no visible global function definition for
     ‘points’
    plot.capthist : labcapt: no visible global function definition for
     ‘par’
    plot.capthist : labcapt: no visible global function definition for
     ‘text’
    plot.capthist : labhead: no visible global function definition for
     ‘par’
    plot.capthist : labhead: no visible global function definition for
     ‘text’
    plot.capthist : ncapt: no visible global function definition for ‘par’
    plot.capthist : ncapt: no visible global function definition for ‘text’
    plot.capthist : plotsignal: no visible global function definition for
     ‘grey’
    plot.capthist : plotsignal: no visible global function definition for
     ‘lines’
    plot.capthist : plotsignal: no visible global function definition for
     ‘par’
    plot.capthist : plotsignal: no visible global function definition for
     ‘points’
    plot.capthist: no visible global function definition for ‘palette’
    plot.capthist: no visible global function definition for ‘par’
    plot.capthist: no visible global function definition for ‘topo.colors’
    plot.capthist: no visible global function definition for ‘points’
    plot.capthist: no visible global function definition for ‘text’
    plot.capthist: no visible global function definition for ‘mtext’
    plot.mask: no visible global function definition for ‘polygon’
    plot.mask: no visible global function definition for ‘terrain.colors’
    plot.mask: no visible binding for global variable ‘points’
    plot.mask : plotpixel: no visible global function definition for ‘rect’
    plot.popn: no visible global function definition for ‘points’
    plot.popn: no visible global function definition for ‘symbols’
    plot.popn: no visible global function definition for ‘polygon’
    plot.secr : gline: no visible global function definition for ‘par’
    plot.secr : gline: no visible global function definition for ‘segments’
    plot.secr : gline: no visible global function definition for ‘lines’
    plot.secr : gline: no visible global function definition for ‘vcov’
    plot.secr: no visible global function definition for ‘qnorm’
    plot.secr: no visible global function definition for ‘predict’
    plot.secrtest : plotcomp : plotone: no visible global function
     definition for ‘hist’
    plot.secrtest : plotcomp : plotone: no visible global function
     definition for ‘abline’
    plot.traps: no visible global function definition for ‘par’
    plot.traps: no visible global function definition for ‘segments’
    plot.traps : plotvertices: no visible global function definition for
     ‘points’
    plot.traps : <anonymous>: no visible global function definition for
     ‘polygon’
    plot.traps: no visible global function definition for ‘text’
    plot.traps : <anonymous>: no visible global function definition for
     ‘lines’
    plot.traps: no visible global function definition for ‘points’
    plotMCP : plotone: no visible global function definition for ‘par’
    plotMCP : plotone: no visible global function definition for ‘polygon’
    plotMCP : mcp: no visible global function definition for ‘chull’
    plotMCP: no visible global function definition for ‘par’
    plotMCP : labhead: no visible global function definition for ‘text’
    polys: no visible global function definition for ‘terms’
    predict.secr: no visible global function definition for ‘qnorm’
    predict.secrlist: no visible binding for global variable ‘predict’
    predictD: no visible global function definition for ‘qnorm’
    print.secr: no visible global function definition for ‘sd’
    print.secr: no visible global function definition for ‘coef’
    print.secr: no visible global function definition for ‘predict’
    rbind.capthist : check: no visible global function definition for ‘is’
    rbind.mask : check: no visible global function definition for ‘is’
    rbind.popn : check: no visible global function definition for ‘is’
    rbind.traps : check: no visible global function definition for ‘is’
    rbind.traps : fillmissing: no visible global function definition for
     ‘flush.console’
    read.SPACECAP: no visible global function definition for ‘read.csv’
    read.SPACECAP: no visible global function definition for ‘dist’
    read.capthist: no visible binding for global variable ‘count.fields’
    read.capthist: no visible binding for global variable ‘read.table’
    read.mask: no visible global function definition for ‘read.csv’
    read.mask: no visible global function definition for ‘read.table’
    read.mask: no visible global function definition for ‘dist’
    read.telemetry: no visible binding for global variable ‘count.fields’
    read.telemetry: no visible binding for global variable ‘read.table’
    read.telemetry : readtraps: no visible global function definition for
     ‘chull’
    read.traps: no visible global function definition for ‘count.fields’
    read.traps: no visible global function definition for ‘read.table’
    read.traps: no visible global function definition for ‘dist’
    reduce.traps: no visible global function definition for ‘cutree’
    reduce.traps: no visible global function definition for ‘hclust’
    reduce.traps: no visible global function definition for ‘dist’
    refreshMCP: no visible global function definition for ‘chull’
    region.N: no visible global function definition for ‘predict’
    reparameterize.esa : g0fromesa: no visible global function definition
     for ‘uniroot’
    score.test: no visible global function definition for ‘pchisq’
    secr.fit: no visible global function definition for ‘update’
    secr.fit: no visible global function definition for ‘formula’
    secr.fit: no visible global function definition for ‘coef’
    secr.fit: no visible binding for global variable ‘optimise’
    secr.fit: no visible binding for global variable ‘nlm’
    secr.fit: no visible binding for global variable ‘optim’
    secr.loglikfn: no visible global function definition for
     ‘flush.console’
    secr.test : statfn: no visible global function definition for
     ‘deviance’
    secr.test : statfn: no visible global function definition for
     ‘df.residual’
    sim.capthist: no visible global function definition for ‘runif’
    sim.capthist: no visible global function definition for ‘rpois’
    sim.detect: no visible global function definition for ‘predict’
    sim.detect: no visible global function definition for ‘coef’
    sim.popn : turnover: no visible global function definition for ‘rnorm’
    sim.popn : turnover: no visible global function definition for ‘rbinom’
    sim.popn : turnover: no visible global function definition for ‘rpois’
    sim.popn: no visible global function definition for ‘runif’
    sim.popn : getnm: no visible global function definition for ‘rpois’
    sim.popn : getnm: no visible global function definition for ‘rmultinom’
    sim.popn: no visible global function definition for ‘rpois’
    sim.popn: no visible global function definition for ‘rbeta’
    sim.popn: no visible global function definition for ‘rnorm’
    sim.resight: no visible global function definition for ‘runif’
    sim.secr : <anonymous>: no visible global function definition for
     ‘deviance’
    sim.secr : <anonymous>: no visible global function definition for
     ‘df.residual’
    simulate.secr: no visible global function definition for ‘runif’
    smooths: no visible global function definition for ‘terms’
    spacing.mask: no visible global function definition for ‘dist’
    spacing.traps: no visible global function definition for ‘dist’
    spatialscale: no visible global function definition for ‘uniroot’
    spotHeight: no visible global function definition for ‘locator’
    spotHeight: no visible global function definition for ‘points’
    spotHeight: no visible global function definition for ‘flush.console’
    stdform : RHS: no visible global function definition for ‘as.formula’
    strip.legend: no visible global function definition for ‘par’
    strip.legend : plotpixel: no visible global function definition for
     ‘rect’
    strip.legend: no visible global function definition for ‘strwidth’
    strip.legend: no visible global function definition for ‘strheight’
    strip.legend: no visible global function definition for ‘rect’
    strip.legend: no visible global function definition for ‘text’
    suggest.buffer: no visible global function definition for ‘uniroot’
    sumDpdot: no visible global function definition for ‘coef’
    summary.capthist: no visible global function definition for ‘sd’
    telemetry.LC : dfn: no visible global function definition for ‘var’
    telemetry.LCmask : dfn: no visible global function definition for ‘var’
    telemetry.LT : normalize: no visible global function definition for
     ‘integrate’
    trap.builder : position: no visible global function definition for
     ‘runif’
    trap.builder: no visible global function definition for ‘runif’
    traps<-: no visible global function definition for ‘is’
    usagePlot: no visible global function definition for ‘symbols’
    usagePlot: no visible global function definition for ‘points’
    write.SPACECAP: no visible global function definition for ‘is’
    write.SPACECAP: no visible global function definition for ‘write.table’
    write.capthist: no visible global function definition for ‘is’
    write.captures: no visible global function definition for ‘is’
    write.captures: no visible global function definition for ‘write.table’
    write.traps: no visible global function definition for ‘is’
    write.traps: no visible global function definition for ‘write.table’
    writeGPS: no visible global function definition for ‘write.table’
    xy2CH: no visible global function definition for ‘chull’
    zip.est.c: no visible global function definition for ‘optimize’
    Undefined global functions or variables:
     .filled.contour AIC abline approx approxfun as.formula chisq.test
     chull coef contour contourLines count.fields cutree deviance
     df.residual dist flush.console formula getS3method grey hclust hist
     integrate is lines lm locator logLik model.matrix mtext nlm nls optim
     optimise optimize palette par pchisq persp pgamma plnorm pnorm points
     polygon predict qchisq qnorm rbeta rbinom read.csv read.table rect
     rmultinom rnbinom rnorm rpois runif sd segments smooth.spline
     strheight strwidth symbols terms terrain.colors text topo.colors
     uniroot update update.formula var vcov write.table
    Consider adding
     importFrom("grDevices", "chull", "contourLines", "grey", "palette",
     "terrain.colors", "topo.colors")
     importFrom("graphics", ".filled.contour", "abline", "contour", "hist",
     "lines", "locator", "mtext", "par", "persp", "points",
     "polygon", "rect", "segments", "strheight", "strwidth",
     "symbols", "text")
     importFrom("methods", "is")
     importFrom("stats", "AIC", "approx", "approxfun", "as.formula",
     "chisq.test", "coef", "cutree", "deviance", "df.residual",
     "dist", "formula", "hclust", "integrate", "lm", "logLik",
     "model.matrix", "nlm", "nls", "optim", "optimise",
     "optimize", "pchisq", "pgamma", "plnorm", "pnorm",
     "predict", "qchisq", "qnorm", "rbeta", "rbinom",
     "rmultinom", "rnbinom", "rnorm", "rpois", "runif", "sd",
     "smooth.spline", "terms", "uniroot", "update",
     "update.formula", "var", "vcov")
     importFrom("utils", "count.fields", "flush.console", "getS3method",
     "read.csv", "read.table", "write.table")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.9.5
Check: R code for possible problems
Result: NOTE
    AIC.secr: no visible global function definition for 'AIC'
    ARL : MMDMxy: no visible global function definition for 'dist'
    ARL: no visible global function definition for 'coef'
    ARL: no visible global function definition for 'nls'
    ARL: no visible global function definition for 'lines'
    BSS: no visible global function definition for 'pnorm'
    CG: no visible global function definition for 'pgamma'
    CLN: no visible global function definition for 'plnorm'
    CV: no visible global function definition for 'sd'
    CVa: no visible global function definition for 'predict'
    CVa0: no visible global function definition for 'predict'
    HCG: no visible global function definition for 'pgamma'
    LLsurface.secr: no visible global function definition for 'coef'
    LLsurface.secr: no visible global function definition for
     'flush.console'
    LLsurface.secr: no visible global function definition for 'contour'
    LLsurface.secr: no visible global function definition for 'points'
    LN.interval: no visible global function definition for 'qnorm'
    LR.test: no visible global function definition for 'getS3method'
    LR.test: no visible global function definition for 'logLik'
    LR.test: no visible global function definition for 'pchisq'
    M0: no visible global function definition for 'optimize'
    MATA : fn: no visible global function definition for 'pnorm'
    MATA: no visible global function definition for 'uniroot'
    MMDM : MMDMxy: no visible global function definition for 'dist'
    MMDM : SE: no visible global function definition for 'var'
    Mb: no visible global function definition for 'optimize'
    Mh2.est: no visible global function definition for 'nlm'
    Mhbeta.est: no visible global function definition for 'nlm'
    N.Mt: no visible global function definition for 'optimize'
    PG : inpoly: no visible global function definition for 'points'
    SN: no visible global function definition for 'pnorm'
    SNS: no visible global function definition for 'pnorm'
    SS: no visible global function definition for 'pnorm'
    SSS: no visible global function definition for 'pnorm'
    add.cl: no visible global function definition for 'qnorm'
    attenuationplot : aline: no visible global function definition for
     'lines'
    autoini: no visible global function definition for 'runif'
    autoini: no visible global function definition for 'uniroot'
    badsmooths: no visible global function definition for 'terms'
    bias.D : gr: no visible global function definition for 'plnorm'
    bias.D : gr: no visible global function definition for 'pgamma'
    bias.D : gr: no visible global function definition for 'pnorm'
    bias.D : integrand1: no visible global function definition for
     'predict'
    bias.D : integrand2: no visible global function definition for
     'predict'
    bias.D: no visible global function definition for 'nls'
    bias.D: no visible global function definition for 'coef'
    bias.D: no visible global function definition for 'smooth.spline'
    bias.D: no visible global function definition for 'approxfun'
    bias.D: no visible global function definition for 'integrate'
    bias.D : <anonymous>: no visible global function definition for
     'integrate'
    buffer.contour : oneconvexbuffer: no visible global function definition
     for 'chull'
    buffer.contour : oneconvexbuffer: no visible global function definition
     for 'lines'
    buffer.contour: no visible global function definition for 'contour'
    buffer.contour: no visible global function definition for
     '.filled.contour'
    buffer.contour: no visible global function definition for
     'contourLines'
    circular.p: no visible global function definition for 'integrate'
    circular.p : fnr: no visible global function definition for 'integrate'
    circular.r : getroot: no visible global function definition for
     'uniroot'
    circular.r: no visible global function definition for 'integrate'
    circular.r : fnr: no visible global function definition for 'integrate'
    clone.capthist: no visible global function definition for 'rpois'
    clone.capthist: no visible global function definition for 'rnbinom'
    clone.default: no visible global function definition for 'rpois'
    clone.default: no visible global function definition for 'rnbinom'
    clone.popn: no visible global function definition for 'rpois'
    clone.popn: no visible global function definition for 'rnbinom'
    closure.test : chisq: no visible global function definition for
     'chisq.test'
    closure.test: no visible global function definition for 'pnorm'
    closure.test: no visible global function definition for 'pchisq'
    coef.secr: no visible global function definition for 'qnorm'
    collate: no visible global function definition for 'qnorm'
    collate: no visible binding for global variable 'coef'
    confint.secr : profileInterval : profileLL.lagrange: no visible global
     function definition for 'optim'
    confint.secr : profileInterval: no visible global function definition
     for 'coef'
    confint.secr : profileInterval: no visible global function definition
     for 'predict'
    confint.secr : profileInterval: no visible global function definition
     for 'qchisq'
    confint.secr : profileInterval: no visible global function definition
     for 'uniroot'
    confint.secr: no visible global function definition for 'qchisq'
    darr.est.c: no visible global function definition for 'optimize'
    deleteMaskPoints: no visible global function definition for
     'flush.console'
    deleteMaskPoints: no visible global function definition for 'locator'
    deleteMaskPoints: no visible global function definition for 'points'
    deleteMaskPoints: no visible global function definition for 'winDialog'
    detectfnplot : gline: no visible global function definition for 'par'
    detectfnplot : gline: no visible global function definition for
     'segments'
    detectfnplot : gline: no visible global function definition for 'lines'
    detectpar.secr: no visible global function definition for 'predict'
    distancetotrap : trpi : intrp: no visible global function definition
     for 'approx'
    ellipse.bvn: no visible global function definition for 'var'
    ellipse.bvn: no visible global function definition for 'qchisq'
    ellipse.bvn: no visible global function definition for 'polygon'
    ellipse.secr: no visible global function definition for 'palette'
    ellipse.secr: no visible global function definition for 'vcov'
    ellipse.secr: no visible global function definition for 'coef'
    ellipse.secr: no visible global function definition for 'qchisq'
    ellipse.secr: no visible global function definition for 'lines'
    ellipse.secr: no visible global function definition for 'points'
    esa: no visible global function definition for 'coef'
    esa.plot: no visible global function definition for 'lines'
    esa.plot.secr: no visible global function definition for 'par'
    expected.n: no visible global function definition for 'predict'
    extract.estimates: no visible binding for global variable 'predict'
    fxi.contour : fxi: no visible global function definition for 'approx'
    fxi.contour : fxi: no visible global function definition for
     'contourLines'
    fxi.contour : fxi: no visible global function definition for 'contour'
    fxi.contour : fxi: no visible global function definition for
     '.filled.contour'
    fxi.contour : fxi: no visible global function definition for 'points'
    fxi.mode: no visible global function definition for 'nlm'
    fxi.secr: no visible global function definition for 'coef'
    gamsetup: no visible global function definition for 'update.formula'
    general.model.matrix: no visible global function definition for
     'model.matrix'
    getMeanSD : MeanSD: no visible global function definition for 'sd'
    inflatechull: no visible global function definition for 'chull'
    ip.secr: no visible global function definition for 'flush.console'
    ip.secr: no visible global function definition for 'lm'
    ip.secr: no visible global function definition for 'coef'
    ip.secr: no visible global function definition for 'var'
    ip.secr : <anonymous>: no visible global function definition for 'sd'
    jack.est: no visible global function definition for 'pchisq'
    jackknife.est: no visible global function definition for 'pchisq'
    make.systematic: no visible global function definition for 'runif'
    mask.check: no visible global function definition for 'predict'
    mask.check : sfit: no visible global function definition for 'predict'
    mask.check: no visible global function definition for 'flush.console'
    memo: no visible global function definition for 'flush.console'
    merge.capthist : check: no visible global function definition for 'is'
    merge.capthist: no visible global function definition for 'dist'
    mindistfromedge: no visible global function definition for 'chull'
    model.average: no visible global function definition for 'AIC'
    model.average : <anonymous>: no visible global function definition for
     'coef'
    model.average : <anonymous>: no visible global function definition for
     'vcov'
    model.average: no visible binding for global variable 'vcov'
    model.average: no visible global function definition for 'qnorm'
    naivesigma: no visible global function definition for 'uniroot'
    null.est.c: no visible global function definition for 'optimize'
    pdot.contour: no visible global function definition for 'contour'
    pdot.contour: no visible global function definition for
     '.filled.contour'
    pdot.contour: no visible global function definition for 'contourLines'
    plot.Dsurface: no visible global function definition for 'contour'
    plot.Dsurface: no visible global function definition for 'persp'
    plot.Rsurface: no visible global function definition for 'contour'
    plot.Rsurface: no visible global function definition for 'persp'
    plot.capthist : plotprox: no visible global function definition for
     'par'
    plot.capthist : plotprox: no visible global function definition for
     'lines'
    plot.capthist : plotprox: no visible global function definition for
     'points'
    plot.capthist : plotpolygoncapt: no visible global function definition
     for 'par'
    plot.capthist : plotpolygoncapt: no visible global function definition
     for 'lines'
    plot.capthist : plotpolygoncapt: no visible global function definition
     for 'points'
    plot.capthist : plotcapt: no visible global function definition for
     'par'
    plot.capthist : plotcapt: no visible global function definition for
     'lines'
    plot.capthist : plotcapt: no visible global function definition for
     'points'
    plot.capthist : labcapt: no visible global function definition for
     'par'
    plot.capthist : labcapt: no visible global function definition for
     'text'
    plot.capthist : labhead: no visible global function definition for
     'par'
    plot.capthist : labhead: no visible global function definition for
     'text'
    plot.capthist : ncapt: no visible global function definition for 'par'
    plot.capthist : ncapt: no visible global function definition for 'text'
    plot.capthist : plotsignal: no visible global function definition for
     'grey'
    plot.capthist : plotsignal: no visible global function definition for
     'lines'
    plot.capthist : plotsignal: no visible global function definition for
     'par'
    plot.capthist : plotsignal: no visible global function definition for
     'points'
    plot.capthist: no visible global function definition for 'palette'
    plot.capthist: no visible global function definition for 'par'
    plot.capthist: no visible global function definition for 'topo.colors'
    plot.capthist: no visible global function definition for 'points'
    plot.capthist: no visible global function definition for 'text'
    plot.capthist: no visible global function definition for 'mtext'
    plot.mask: no visible global function definition for 'polygon'
    plot.mask: no visible global function definition for 'terrain.colors'
    plot.mask: no visible binding for global variable 'points'
    plot.mask : plotpixel: no visible global function definition for 'rect'
    plot.popn: no visible global function definition for 'points'
    plot.popn: no visible global function definition for 'symbols'
    plot.popn: no visible global function definition for 'polygon'
    plot.secr : gline: no visible global function definition for 'par'
    plot.secr : gline: no visible global function definition for 'segments'
    plot.secr : gline: no visible global function definition for 'lines'
    plot.secr : gline: no visible global function definition for 'vcov'
    plot.secr: no visible global function definition for 'qnorm'
    plot.secr: no visible global function definition for 'predict'
    plot.secrtest : plotcomp : plotone: no visible global function
     definition for 'hist'
    plot.secrtest : plotcomp : plotone: no visible global function
     definition for 'abline'
    plot.traps: no visible global function definition for 'par'
    plot.traps: no visible global function definition for 'segments'
    plot.traps : plotvertices: no visible global function definition for
     'points'
    plot.traps : <anonymous>: no visible global function definition for
     'polygon'
    plot.traps: no visible global function definition for 'text'
    plot.traps : <anonymous>: no visible global function definition for
     'lines'
    plot.traps: no visible global function definition for 'points'
    plotMCP : plotone: no visible global function definition for 'par'
    plotMCP : plotone: no visible global function definition for 'polygon'
    plotMCP : mcp: no visible global function definition for 'chull'
    plotMCP: no visible global function definition for 'par'
    plotMCP : labhead: no visible global function definition for 'text'
    polys: no visible global function definition for 'terms'
    predict.secr: no visible global function definition for 'qnorm'
    predict.secrlist: no visible binding for global variable 'predict'
    predictD: no visible global function definition for 'qnorm'
    print.secr: no visible global function definition for 'sd'
    print.secr: no visible global function definition for 'coef'
    print.secr: no visible global function definition for 'predict'
    rbind.capthist : check: no visible global function definition for 'is'
    rbind.mask : check: no visible global function definition for 'is'
    rbind.popn : check: no visible global function definition for 'is'
    rbind.traps : check: no visible global function definition for 'is'
    rbind.traps : fillmissing: no visible global function definition for
     'flush.console'
    read.SPACECAP: no visible global function definition for 'read.csv'
    read.SPACECAP: no visible global function definition for 'dist'
    read.capthist: no visible binding for global variable 'count.fields'
    read.capthist: no visible binding for global variable 'read.table'
    read.mask: no visible global function definition for 'read.csv'
    read.mask: no visible global function definition for 'read.table'
    read.mask: no visible global function definition for 'dist'
    read.telemetry: no visible binding for global variable 'count.fields'
    read.telemetry: no visible binding for global variable 'read.table'
    read.telemetry : readtraps: no visible global function definition for
     'chull'
    read.traps: no visible global function definition for 'count.fields'
    read.traps: no visible global function definition for 'read.table'
    read.traps: no visible global function definition for 'dist'
    reduce.traps: no visible global function definition for 'cutree'
    reduce.traps: no visible global function definition for 'hclust'
    reduce.traps: no visible global function definition for 'dist'
    refreshMCP: no visible global function definition for 'chull'
    region.N: no visible global function definition for 'predict'
    reparameterize.esa : g0fromesa: no visible global function definition
     for 'uniroot'
    score.test: no visible global function definition for 'pchisq'
    secr.fit: no visible global function definition for 'update'
    secr.fit: no visible global function definition for 'formula'
    secr.fit: no visible global function definition for 'coef'
    secr.fit: no visible binding for global variable 'optimise'
    secr.fit: no visible binding for global variable 'nlm'
    secr.fit: no visible binding for global variable 'optim'
    secr.loglikfn: no visible global function definition for
     'flush.console'
    secr.test : statfn: no visible global function definition for
     'deviance'
    secr.test : statfn: no visible global function definition for
     'df.residual'
    sim.capthist: no visible global function definition for 'runif'
    sim.capthist: no visible global function definition for 'rpois'
    sim.detect: no visible global function definition for 'predict'
    sim.detect: no visible global function definition for 'coef'
    sim.popn : turnover: no visible global function definition for 'rnorm'
    sim.popn : turnover: no visible global function definition for 'rbinom'
    sim.popn : turnover: no visible global function definition for 'rpois'
    sim.popn: no visible global function definition for 'runif'
    sim.popn : getnm: no visible global function definition for 'rpois'
    sim.popn : getnm: no visible global function definition for 'rmultinom'
    sim.popn: no visible global function definition for 'rpois'
    sim.popn: no visible global function definition for 'rbeta'
    sim.popn: no visible global function definition for 'rnorm'
    sim.resight: no visible global function definition for 'runif'
    sim.secr : <anonymous>: no visible global function definition for
     'deviance'
    sim.secr : <anonymous>: no visible global function definition for
     'df.residual'
    simulate.secr: no visible global function definition for 'runif'
    smooths: no visible global function definition for 'terms'
    spacing.mask: no visible global function definition for 'dist'
    spacing.traps: no visible global function definition for 'dist'
    spatialscale: no visible global function definition for 'uniroot'
    spotHeight: no visible global function definition for 'locator'
    spotHeight: no visible global function definition for 'points'
    spotHeight: no visible global function definition for 'flush.console'
    stdform : RHS: no visible global function definition for 'as.formula'
    strip.legend: no visible global function definition for 'par'
    strip.legend : plotpixel: no visible global function definition for
     'rect'
    strip.legend: no visible global function definition for 'strwidth'
    strip.legend: no visible global function definition for 'strheight'
    strip.legend: no visible global function definition for 'rect'
    strip.legend: no visible global function definition for 'text'
    suggest.buffer: no visible global function definition for 'uniroot'
    sumDpdot: no visible global function definition for 'coef'
    summary.capthist: no visible global function definition for 'sd'
    telemetry.LC : dfn: no visible global function definition for 'var'
    telemetry.LCmask : dfn: no visible global function definition for 'var'
    telemetry.LT : normalize: no visible global function definition for
     'integrate'
    trap.builder : position: no visible global function definition for
     'runif'
    trap.builder: no visible global function definition for 'runif'
    traps<-: no visible global function definition for 'is'
    usagePlot: no visible global function definition for 'symbols'
    usagePlot: no visible global function definition for 'points'
    write.SPACECAP: no visible global function definition for 'is'
    write.SPACECAP: no visible global function definition for 'write.table'
    write.capthist: no visible global function definition for 'is'
    write.captures: no visible global function definition for 'is'
    write.captures: no visible global function definition for 'write.table'
    write.traps: no visible global function definition for 'is'
    write.traps: no visible global function definition for 'write.table'
    writeGPS: no visible global function definition for 'write.table'
    xy2CH: no visible global function definition for 'chull'
    zip.est.c: no visible global function definition for 'optimize'
    Undefined global functions or variables:
     .filled.contour AIC abline approx approxfun as.formula chisq.test
     chull coef contour contourLines count.fields cutree deviance
     df.residual dist flush.console formula getS3method grey hclust hist
     integrate is lines lm locator logLik model.matrix mtext nlm nls optim
     optimise optimize palette par pchisq persp pgamma plnorm pnorm points
     polygon predict qchisq qnorm rbeta rbinom read.csv read.table rect
     rmultinom rnbinom rnorm rpois runif sd segments smooth.spline
     strheight strwidth symbols terms terrain.colors text topo.colors
     uniroot update update.formula var vcov winDialog write.table
    Consider adding
     importFrom("grDevices", "chull", "contourLines", "grey", "palette",
     "terrain.colors", "topo.colors")
     importFrom("graphics", ".filled.contour", "abline", "contour", "hist",
     "lines", "locator", "mtext", "par", "persp", "points",
     "polygon", "rect", "segments", "strheight", "strwidth",
     "symbols", "text")
     importFrom("methods", "is")
     importFrom("stats", "AIC", "approx", "approxfun", "as.formula",
     "chisq.test", "coef", "cutree", "deviance", "df.residual",
     "dist", "formula", "hclust", "integrate", "lm", "logLik",
     "model.matrix", "nlm", "nls", "optim", "optimise",
     "optimize", "pchisq", "pgamma", "plnorm", "pnorm",
     "predict", "qchisq", "qnorm", "rbeta", "rbinom",
     "rmultinom", "rnbinom", "rnorm", "rpois", "runif", "sd",
     "smooth.spline", "terms", "uniroot", "update",
     "update.formula", "var", "vcov")
     importFrom("utils", "count.fields", "flush.console", "getS3method",
     "read.csv", "read.table", "winDialog", "write.table")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavor: r-devel-windows-ix86+x86_64