LDheatmap: Graphical display of pairwise linkage disequilibria between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

Version: 0.99-1
Depends: R (≥ 2.14.0), grid
Imports: genetics
Suggests: rtracklayer, GenomicRanges, chopsticks (≥ 1.18.0), lattice, ggplot2
Published: 2013-09-21
Author: Ji-Hyung Shin, Sigal Blay, Nicholas Lewin-Koh, Brad McNeney, Jinko Graham
Maintainer: Brad McNeney <mcneney at sfu.ca>
License: GPL-3
URL: http://stat.sfu.ca/statgen/research/ldheatmap.html
NeedsCompilation: no
Citation: LDheatmap citation info
Materials: ChangeLog
In views: Genetics
CRAN checks: LDheatmap results


Reference manual: LDheatmap.pdf
Vignettes: LDheatmap
LDheatmap adding tracks example
Package source: LDheatmap_0.99-1.tar.gz
Windows binaries: r-devel: LDheatmap_0.99-1.zip, r-release: LDheatmap_0.99-1.zip, r-oldrel: LDheatmap_0.99-1.zip
OS X Snow Leopard binaries: r-release: LDheatmap_0.99-1.tgz, r-oldrel: LDheatmap_0.99-1.tgz
OS X Mavericks binaries: r-release: LDheatmap_0.99-1.tgz
Old sources: LDheatmap archive

Reverse dependencies:

Reverse imports: synbreed