MultiSV: MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing

MultiSV is an R package for identification of structural variations in multiple populations based on whole genome resequencing. It fits linear mixed model and identifies structural variations in multiple populations using whole genome sequencing data. It could also be manipulated to use on RNA-seq data for differential gene expression (implementation in future releases). Main steps for analysis include generating read depth in bins using ComputeBinCounts. conversion of bins to MultiSV format using Bin2MultiSV. Finally, identification of structural variations using CallMultiSV.

Version: 0.0-67
Depends: R (≥ 2.10)
Imports: nlme, reshape
Published: 2014-08-27
Author: Khurram Maqbool
Maintainer: Khurram Maqbool <khurram.maqbool at outlook.com>
License: LGPL (≥ 3)
NeedsCompilation: no
Citation: MultiSV citation info
CRAN checks: MultiSV results

Downloads:

Reference manual: MultiSV.pdf
Package source: MultiSV_0.0-67.tar.gz
Windows binaries: r-devel: MultiSV_0.0-67.zip, r-release: MultiSV_0.0-67.zip, r-oldrel: MultiSV_0.0-67.zip
OS X Snow Leopard binaries: r-release: MultiSV_0.0-67.tgz, r-oldrel: MultiSV_0.0-67.tgz
OS X Mavericks binaries: r-release: MultiSV_0.0-67.tgz
Old sources: MultiSV archive