Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.
| Version: |
1.2.1 |
| Depends: |
vegan, ggplot2, stats, ape |
| Imports: |
gridExtra, RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid, ggmap, permute, VennDiagram, data.table, FD, MASS, RgoogleMaps, lattice, reshape, ade4, phangorn, phytools, Hmisc |
| Suggests: |
testthat, mapproj, gtable, indicspecies, Heatplus |
| Published: |
2015-05-23 |
| Author: |
Wen Chen, Joshua Simpson, C. Andre Levesque |
| Maintainer: |
Wen Chen <Wen.Chen at agr.gc.ca> |
| License: |
MIT + file LICENSE |
| Copyright: |
Government of Canada |
| URL: |
http://cran.r-project.org/web/packages/RAM/index.html |
| NeedsCompilation: |
no |
| Citation: |
RAM citation info |
| Materials: |
NEWS ChangeLog |
| CRAN checks: |
RAM results |