RevEcoR: Reverse Ecology Analysis on Microbiome

An implementation of the reverse ecology framework. Reverse ecology refers to the use of genomics to study ecology with no a priori assumptions about the organism(s) under consideration, linking organisms to their environment. It allows researchers to reconstruct the metabolic networks and study the ecology of poorly characterized microbial species from their genomic information, and has substantial potentials for microbial community ecological analysis.

Version: 0.99.2
Depends: R (≥ 2.14)
Imports: Matrix, igraph, XML, stringr, magrittr, gtools, plyr
Suggests: knitr, methods
Published: 2015-06-08
Author: Yang Cao, Fei Li
Maintainer: Yang Cao <yiluheihei at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
CRAN checks: RevEcoR results

Downloads:

Reference manual: RevEcoR.pdf
Vignettes: RevEcoR
Package source: RevEcoR_0.99.2.tar.gz
Windows binaries: r-devel: RevEcoR_0.99.2.zip, r-release: RevEcoR_0.99.2.zip, r-oldrel: RevEcoR_0.99.2.zip
OS X Snow Leopard binaries: r-release: RevEcoR_0.99.2.tgz, r-oldrel: not available
OS X Mavericks binaries: r-release: RevEcoR_0.99.2.tgz
Old sources: RevEcoR archive