SimReg: Similarity Regression Functions

Functions for performing Bayesian ‘similarity regression’, adapted to regression of binary genotype against HPO encoded phenotype. The purpose is to weigh the evidence for an association between phenotype and genotype. This is done by estimating a Bayes factor comparing a ‘no association’ model with one in which log odds of presenting a particular binary genotype is linked to the semantic similarity between the corresponding phenotype and an estimated characteristic phenotype.

Version: 1.1
Depends: R (≥ 3.0.0), hpoPlot
Imports: Rcpp (≥ 0.11.1), dplyr, parallel, ggplot2, plotrix, gridExtra, reshape2
LinkingTo: Rcpp
Published: 2015-08-27
Author: Daniel Greene
Maintainer: Daniel Greene <dg333 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: SimReg results

Downloads:

Reference manual: SimReg.pdf
Package source: SimReg_1.1.tar.gz
Windows binaries: r-devel: SimReg_1.1.zip, r-release: SimReg_1.1.zip, r-oldrel: SimReg_1.1.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: SimReg_1.1.tgz