apex: Phylogenetic Methods for Multiple Gene Data

Toolkit for the analysis of multiple gene data. Apex implements the new S4 classes "multidna", "multiphyDat" and associated methods to handle aligned DNA sequences from multiple genes.

Version: 1.0.0
Depends: R (≥ 3.1.3), methods, ape, phangorn
Imports: adegenet
Suggests: testthat, knitr
Published: 2015-04-15
Author: Thibaut Jombart [aut, cre], Zhian Namir Kamvar [aut], Klaus Schliep [aut], Rebecca Harris [aut]
Maintainer: Thibaut Jombart <t.jombart at imperial.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
CRAN checks: apex results

Downloads:

Reference manual: apex.pdf
Vignettes: apex: Phylogenetic Methods for Multiple Gene Data.
Package source: apex_1.0.0.tar.gz
Windows binaries: r-devel: apex_1.0.0.zip, r-release: apex_1.0.0.zip, r-oldrel: apex_1.0.0.zip
OS X Snow Leopard binaries: r-release: apex_1.0.0.tgz, r-oldrel: apex_1.0.0.tgz
OS X Mavericks binaries: r-release: apex_1.0.0.tgz