Imports bead-summary data from Illumina scanner. Pre-processes using a suite of optional normalizations and transformations. Clusters and automatically calls genotypes, critically able to handle markers in duplicated regions of the genome (multisite variants; MSVs). Interactive clustering if needed. MSVs with variation in both paralogs may be resolved and mapped to their respective chromosomes. Quality control including pedigree checking and visual assessment of clusters. Too large data-sets are handled by working on smaller subsets of the data in sequence.
| Version: | 1.1.0 |
| Depends: | R (≥ 2.10.0), Biobase (≥ 2.5.5), methods, geneplotter |
| Imports: | rggobi, limma |
| Published: | 2011-02-21 |
| Author: | Lars Gidskehaug |
| Maintainer: | Lars Gidskehaug <lg at camo.no> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| SystemRequirements: | GGobi |
| Citation: | beadarrayMSV citation info |
| Materials: | ChangeLog |
| CRAN checks: | beadarrayMSV results |
| Reference manual: | beadarrayMSV.pdf |
| Package source: | beadarrayMSV_1.1.0.tar.gz |
| Windows binaries: | r-devel: beadarrayMSV_1.1.0.zip, r-release: beadarrayMSV_1.1.0.zip, r-oldrel: beadarrayMSV_1.1.0.zip |
| OS X Snow Leopard binaries: | r-release: not available, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: not available |
| Old sources: | beadarrayMSV archive |