coala: A Framework for Coalescent Simulation

Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. This package allows to specify such models, transparently calls a suitable simulator, parses the results and calculates additional summary statistics. It supports the simulators 'ms', 'msms' and 'scrm' and can simulate finite-sites mutation models by combining the simulators with the program 'seq-gen'.

Version: 0.1.1
Depends: R (≥ 3.1.0)
Imports: assertthat (≥ 0.1), methods, R6 (≥ 2.0.1), Rcpp (≥ 0.11.0), rehh (≥ 1.11), scrm (≥ 1.6.0-2), stats, utils
LinkingTo: Rcpp, RcppArmadillo (≥ 0.3.810.0)
Suggests: abc (≥ 2.0), knitr, rmarkdown, testthat (≥ 0.10.0)
Published: 2015-07-17
Author: Paul Staab [aut, cre, cph], Dirk Metzler [ths]
Maintainer: Paul Staab <develop at>
License: MIT + file LICENSE
NeedsCompilation: yes
Materials: NEWS
CRAN checks: coala results


Reference manual: coala.pdf
Vignettes: Using coala for ABC
Installing ms, msms and seqgen
Package source: coala_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: coala_0.1.1.tgz
Old sources: coala archive