Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...
| Version: | 1.3.8.1 |
| Depends: | combinat, gdata, gtools, MASS, mvtnorm |
| Published: | 2013-09-03 |
| Author: | Gregory Warnes, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man. |
| Maintainer: | Gregory Warnes <greg at warnes.net> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| Materials: | NEWS ChangeLog |
| In views: | Genetics |
| CRAN checks: | genetics results |
| Reference manual: | genetics.pdf |
| Package source: | genetics_1.3.8.1.tar.gz |
| Windows binaries: | r-devel: genetics_1.3.8.1.zip, r-release: genetics_1.3.8.1.zip, r-oldrel: genetics_1.3.8.1.zip |
| OS X Snow Leopard binaries: | r-release: genetics_1.3.8.1.tgz, r-oldrel: genetics_1.3.8.1.tgz |
| OS X Mavericks binaries: | r-release: genetics_1.3.8.1.tgz |
| Old sources: | genetics archive |
| Reverse depends: | boostSeq, forensic, introgress, luca, MasterBayes |
| Reverse imports: | LDheatmap, PopGenReport, snp.plotter |
| Reverse suggests: | GenABEL, readGenalex |