stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

A toolbox for a construction of protein-protein interaction networks through the 'STRING' application programming interface, and an inference of Gaussian networks through 'SIMoNe' and 'WGCNA' approach, from DE genes analysis results and expression data. Additional functions are provided to import automatically networks into an active 'Cytoscape' session.

Version: 1.1
Imports: AnnotationDbi, GO.db, VennDiagram, simone, biomaRt, limma, pspearman, igraph, httr, RJSONIO, RCurl, org.Hs.eg.db, graphics, grDevices, stats, utils
Suggests: knitr
Published: 2015-07-22
Author: Emmanuel Chaplais, Henri-Jean Garchon
Maintainer: Emmanuel Chaplais <emmanuel.chaplais at inserm.fr>
License: GPL-3
NeedsCompilation: no
CRAN checks: stringgaussnet results

Downloads:

Reference manual: stringgaussnet.pdf
Vignettes: User's guide
Package source: stringgaussnet_1.1.tar.gz
Windows binaries: r-devel: stringgaussnet_1.1.zip, r-release: stringgaussnet_1.1.zip, r-oldrel: stringgaussnet_1.1.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: stringgaussnet_1.0.tgz
Old sources: stringgaussnet archive