Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.0.1) |
| Imports: | parallel, gss, lattice, pheatmap, doParallel, foreach, reshape, edgeR |
| Published: | 2015-04-19 |
| Author: | Fan Gao, Xiaoxiao Sun |
| Maintainer: | Fan Gao <fangaohz at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | timeSeq results |
| Reference manual: | timeSeq.pdf |
| Package source: | timeSeq_1.0.0.tar.gz |
| Windows binaries: | r-devel: timeSeq_1.0.0.zip, r-release: timeSeq_1.0.0.zip, r-oldrel: timeSeq_1.0.0.zip |
| OS X Snow Leopard binaries: | r-release: not available, r-oldrel: timeSeq_1.0.0.tgz |
| OS X Mavericks binaries: | r-release: timeSeq_1.0.0.tgz |