CRAN Package Check Results for Package FAiR

Last updated on 2015-11-20 00:47:19.

Check Details

Version: 0.4-15
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Rgraphviz’ ‘corpcor’ ‘energy’ ‘mvnmle’ ‘mvnormtest’ ‘nFactors’
     ‘polycor’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-15
Check: foreign function calls
Result: NOTE
    Calls with DUP:
     .C(FAiR_QD_sum, sum = numeric(1), x = x, middle = middle, length = length(x),
     DUP = FALSE, NAOK = TRUE)
     .C(FAiR_QD_grad, grad = numeric(length_x), x = x, middle = middle,
     length = length_x, holder = numeric(length_x), DUP = FALSE,
     NAOK = TRUE)
     .C("exhaustive_mve", number = as.integer(0), combos = combos,
     lengthcombos = length(combos), Xdata = as.double(X), Xrow = nrow(X),
     Xcol = ncol(X), DUP = FALSE, PACKAGE = "FAiR")
    DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.4-15
Check: R code for possible problems
Result: NOTE
    .onAttach: no visible global function definition for
     ‘packageDescription’
    .onAttach: no visible global function definition for ‘flush.console’
    FA2draws: no visible global function definition for ‘runif’
    FAiR_ADF: no visible global function definition for ‘Matrix’
    FAiR_ADF_robust: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘cov.wt’
    FAiR_ADF_unbiased: no visible global function definition for ‘huberM’
    FAiR_DAG: no visible global function definition for ‘nodes’
    FAiR_DAG: no visible global function definition for ‘addEdge’
    FAiR_DAG: no visible global function definition for ‘subGraph’
    FAiR_HK: no visible global function definition for ‘median’
    FAiR_Mcd: no visible global function definition for ‘CovMcd’
    FAiR_Mcd: no visible global function definition for ‘cov2cor’
    FAiR_PACE : temp.fun: no visible global function definition for
     ‘complete.cases’
    FAiR_PACE: no visible global function definition for ‘combn’
    FAiR_RMSEA : foo: no visible global function definition for ‘pchisq’
    FAiR_RMSEA: no visible global function definition for ‘uniroot’
    FAiR_RMSEA: no visible global function definition for ‘pchisq’
    FAiR_Steiger : foo: no visible global function definition for ‘pchisq’
    FAiR_Steiger: no visible global function definition for ‘uniroot’
    FAiR_blockanator: no visible global function definition for ‘gmessage’
    FAiR_bootstrap2dppMatrix: no visible global function definition for
     ‘Matrix’
    FAiR_bounds_coef: no visible global function definition for ‘gmessage’
    FAiR_bounds_cormat: no visible global function definition for
     ‘gmessage’
    FAiR_constraints_1st : FAiR_criterion_evRF_1st: no visible global
     function definition for ‘cov2cor’
    FAiR_constraints_1st : FAiR_criterion_dist_cols_1st: no visible global
     function definition for ‘dist’
    FAiR_constraints_2nd : FAiR_criterion_dist_cols_2nd: no visible global
     function definition for ‘dist’
    FAiR_constraints_2nd : FAiR_criterion_evRF_2nd: no visible global
     function definition for ‘cov2cor’
    FAiR_cor.rank: no visible global function definition for ‘cor’
    FAiR_cor.rank: no visible global function definition for ‘Diagonal’
    FAiR_cov.shrink: no visible global function definition for ‘cov.shrink’
    FAiR_cov.shrink: no visible global function definition for ‘Diagonal’
    FAiR_cov.shrink: no visible binding for global variable ‘weighted.mean’
    FAiR_cov.shrink: no visible global function definition for ‘cov2cor’
    FAiR_deriv_matrix: no visible global function definition for
     ‘numericDeriv’
    FAiR_draws2CI: no visible binding for global variable ‘quantile’
    FAiR_edit: no visible global function definition for ‘ggroup’
    FAiR_edit: no visible global function definition for ‘glabel’
    FAiR_edit: no visible global function definition for ‘flush.console’
    FAiR_edit: no visible global function definition for ‘gdf’
    FAiR_edit: no visible global function definition for ‘gbasicdialog’
    FAiR_edit: no visible global function definition for ‘guiToolkit’
    FAiR_equality_restrictions: no visible global function definition for
     ‘gmessage’
    FAiR_get_answer: no visible global function definition for ‘ggroup’
    FAiR_get_answer: no visible global function definition for ‘glabel’
    FAiR_get_answer: no visible global function definition for ‘gseparator’
    FAiR_get_answer: no visible global function definition for ‘gradio’
    FAiR_get_answer: no visible global function definition for ‘gslider’
    FAiR_get_answer: no visible global function definition for
     ‘gcheckboxgroup’
    FAiR_get_answer: no visible global function definition for
     ‘flush.console’
    FAiR_get_answer: no visible global function definition for
     ‘gbasicdialog’
    FAiR_get_answer: no visible global function definition for ‘guiToolkit’
    FAiR_get_mapping_rule_args: no visible global function definition for
     ‘gmessage’
    FAiR_hetcor: no visible global function definition for ‘hetcor’
    FAiR_hetcor: no visible global function definition for ‘cor’
    FAiR_hetcor: no visible global function definition for ‘Diagonal’
    FAiR_indicators_FC: no visible global function definition for
     ‘gmessage’
    FAiR_make_manifest.data_numeric: no visible global function definition
     for ‘cov.wt’
    FAiR_make_manifest.data_numeric: no visible binding for global variable
     ‘weighted.mean’
    FAiR_make_manifest.data_numeric: no visible global function definition
     for ‘cov2cor’
    FAiR_make_manifest_list: no visible global function definition for
     ‘Diagonal’
    FAiR_make_manifest_list: no visible global function definition for
     ‘cov2cor’
    FAiR_make_starts_for_Rotate: no visible global function definition for
     ‘combn’
    FAiR_make_target: no visible global function definition for ‘gmessage’
    FAiR_mlest: no visible global function definition for ‘mlest’
    FAiR_mlest: no visible global function definition for ‘cov2cor’
    FAiR_nearPD: no visible global function definition for ‘cov2cor’
    FAiR_numeric_gradient: no visible global function definition for
     ‘numericDeriv’
    FAiR_order_FC: no visible global function definition for ‘gmessage’
    FAiR_paired: no visible global function definition for ‘pchisq’
    FAiR_parallel_4th: no visible global function definition for ‘rnorm’
    FAiR_parallel_4th: no visible global function definition for ‘cov.wt’
    FAiR_parallel_4th: no visible global function definition for ‘cov2cor’
    FAiR_parallel_4th : SEcentile: no visible global function definition
     for ‘dnorm’
    FAiR_parallel_4th : SEcentile: no visible global function definition
     for ‘qnorm’
    FAiR_parallel_4th: no visible binding for global variable ‘sd’
    FAiR_parallel_4th : quant: no visible global function definition for
     ‘quantile’
    FAiR_parse_formula: no visible global function definition for ‘terms’
    FAiR_peg_coefficients: no visible global function definition for
     ‘gmessage’
    FAiR_profile: no visible global function definition for ‘par’
    FAiR_profile: no visible global function definition for ‘abline’
    FAiR_quick_Rotate: no visible global function definition for ‘targetT’
    FAiR_quick_Rotate: no visible global function definition for ‘GPForth’
    FAiR_quick_Rotate: no visible global function definition for ‘targetQ’
    FAiR_quick_Rotate: no visible global function definition for ‘GPFoblq’
    FAiR_quick_Rotate: no visible global function definition for ‘optim’
    FAiR_show_manifest: no visible global function definition for ‘pchisq’
    FAiR_show_manifest: no visible global function definition for ‘cov2cor’
    FAiR_shrink: no visible global function definition for ‘cov2cor’
    FAiR_stress_test: no visible global function definition for ‘dev.off’
    FAiR_stress_test: no visible global function definition for ‘BIC’
    FAiR_test_Browne84: no visible global function definition for ‘pchisq’
    FAiR_test_SB94: no visible global function definition for ‘pchisq’
    FAiR_test_T2: no visible global function definition for ‘pf’
    FAiR_test_YB98: no visible global function definition for ‘pchisq’
    FAiR_test_exact_fit: no visible global function definition for ‘pchisq’
    FAiR_uniquify: no visible global function definition for ‘runif’
    Factanal: no visible global function definition for ‘factanal’
    Factanal: no visible global function definition for ‘flush.console’
    Factanal: no visible global function definition for ‘optim’
    Rotate: no visible global function definition for ‘optim’
    write.CEFA: no visible global function definition for ‘write.table’
    write.cefa: no visible global function definition for ‘write.table’
    create_FAobject,restrictions.independent-manifest.basic: no visible
     binding for global variable ‘factors’
    create_start,restrictions-manifest.basic : <anonymous>: no visible
     global function definition for ‘runif’
    create_start,restrictions.1storder-manifest.basic : <anonymous>: no
     visible global function definition for ‘runif’
    create_start,restrictions.1storder-manifest.basic: no visible global
     function definition for ‘GPForth’
    create_start,restrictions.1storder-manifest.basic: no visible global
     function definition for ‘runif’
    create_start,restrictions.1storder-manifest.basic: no visible global
     function definition for ‘rnorm’
    create_start,restrictions.2ndorder-manifest.basic : <anonymous>: no
     visible global function definition for ‘runif’
    create_start,restrictions.2ndorder-manifest.basic: no visible global
     function definition for ‘GPForth’
    create_start,restrictions.2ndorder-manifest.basic: no visible global
     function definition for ‘runif’
    create_start,restrictions.2ndorder-manifest.basic: no visible global
     function definition for ‘rnorm’
    create_start,restrictions.factanal-manifest.basic : <anonymous>: no
     visible global function definition for ‘runif’
    create_start,restrictions.general-manifest.basic : <anonymous>: no
     visible global function definition for ‘runif’
    create_start,restrictions.general-manifest.basic: no visible global
     function definition for ‘GPForth’
    create_start,restrictions.general-manifest.basic: no visible global
     function definition for ‘runif’
    create_start,restrictions.general-manifest.basic: no visible global
     function definition for ‘rnorm’
    create_start,restrictions.orthonormal-manifest.basic : beta_fun: no
     visible global function definition for ‘runif’
    create_start,restrictions.orthonormal-manifest.basic: no visible global
     function definition for ‘rnorm’
    make_manifest,formula-data.frame-missing: no visible global function
     definition for ‘get_all_vars’
    make_manifest,formula-data.frame-missing: no visible binding for global
     variable ‘Z’
    make_manifest,missing-missing-CovMcd: no visible global function
     definition for ‘cov2cor’
    make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing:
     no visible binding for global variable ‘manfiest’
    make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing:
     no visible binding for global variable ‘criteria’
    pairs,FA: no visible global function definition for ‘par’
    pairs,FA : <anonymous>: no visible global function definition for
     ‘palette’
    pairs,FA : UP: no visible global function definition for ‘abline’
    pairs,FA : UP: no visible global function definition for ‘points’
    pairs,FA : LP: no visible global function definition for ‘abline’
    pairs,FA : LP: no visible global function definition for ‘segments’
    pairs,FA : TP: no visible global function definition for ‘text’
    pairs,FA: no visible global function definition for ‘pairs.default’
    plot,FA-missing: no visible global function definition for ‘addEdge’
    plot,FA-missing: no visible binding for global variable ‘toDot’
    plot,FA.2ndorder-missing: no visible global function definition for
     ‘addEdge’
    plot,FA.2ndorder-missing: no visible global function definition for
     ‘join’
    plot,FA.2ndorder-missing: no visible binding for global variable
     ‘toDot’
    plot,FA.general-missing: no visible global function definition for
     ‘join’
    plot,FA.general-missing: no visible binding for global variable ‘toDot’
    plot,manifest.basic-missing: no visible global function definition for
     ‘heatmap’
    plot,manifest.data.mcd-missing: no visible global function definition
     for ‘heatmap’
    plot,summary.FA-ANY: no visible global function definition for
     ‘heatmap’
    profile,FA.2ndorder: no visible global function definition for ‘par’
    profile,FA.2ndorder: no visible global function definition for ‘abline’
    profile,FA.general: no visible global function definition for ‘par’
    profile,FA.general: no visible binding for global variable ‘p’
    profile,FA.general: no visible global function definition for ‘abline’
    restrictions2draws,restrictions.1storder-manifest.basic: no visible
     global function definition for ‘rnorm’
    restrictions2draws,restrictions.1storder.EFA-manifest.basic: no visible
     global function definition for ‘rnorm’
    restrictions2draws,restrictions.2ndorder-manifest.basic: no visible
     global function definition for ‘rnorm’
    restrictions2draws,restrictions.general-manifest.basic: no visible
     global function definition for ‘rnorm’
    restrictions2draws,restrictions.orthonormal-manifest.basic: no visible
     global function definition for ‘rnorm’
    screeplot,FA: no visible global function definition for ‘parallel’
    screeplot,FA: no visible global function definition for ‘nScree’
    screeplot,FA: no visible global function definition for ‘plotnScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘parallel’
    screeplot,manifest.basic: no visible global function definition for
     ‘nScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘plotnScree’
    screeplot,manifest.data: no visible global function definition for
     ‘parallel’
    screeplot,manifest.data: no visible global function definition for
     ‘nScree’
    screeplot,manifest.data: no visible global function definition for
     ‘plotnScree’
    screeplot,manifest.data: no visible global function definition for
     ‘cov2cor’
    show,manifest.data: no visible global function definition for
     ‘mshapiro.test’
    show,manifest.data: no visible global function definition for
     ‘mvnorm.etest’
    show,restrictions: no visible global function definition for ‘str’
    show,summary.FA: no visible binding for global variable ‘sd’
    simulate,FA: no visible global function definition for ‘runif’
    uniquenesses,restrictions: no visible binding for global variable
     ‘restrictions’
    Undefined global functions or variables:
     BIC CovMcd Diagonal GPFoblq GPForth Matrix Z abline addEdge combn
     complete.cases cor cov.shrink cov.wt cov2cor criteria dev.off dist
     dnorm factanal factors flush.console gbasicdialog gcheckboxgroup gdf
     get_all_vars ggroup glabel gmessage gradio gseparator gslider
     guiToolkit heatmap hetcor huberM join manfiest median mlest
     mshapiro.test mvnorm.etest nScree nodes numericDeriv optim p
     packageDescription pairs.default palette par parallel pchisq pf
     plotnScree points qnorm quantile restrictions rnorm runif sd segments
     str subGraph targetQ targetT terms text toDot uniroot weighted.mean
     write.table
    Consider adding
     importFrom("grDevices", "dev.off", "palette")
     importFrom("graphics", "abline", "pairs.default", "par", "points",
     "segments", "text")
     importFrom("stats", "BIC", "complete.cases", "cor", "cov.wt",
     "cov2cor", "dist", "dnorm", "factanal", "get_all_vars",
     "heatmap", "median", "numericDeriv", "optim", "pchisq",
     "pf", "qnorm", "quantile", "rnorm", "runif", "sd", "terms",
     "uniroot", "weighted.mean")
     importFrom("utils", "combn", "flush.console", "packageDescription",
     "str", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.4-15
Check: R code for possible problems
Result: NOTE
    FAiR_ADF: no visible global function definition for ‘Matrix’
    FAiR_ADF_robust: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘huberM’
    FAiR_DAG: no visible global function definition for ‘nodes’
    FAiR_DAG: no visible global function definition for ‘addEdge’
    FAiR_DAG: no visible global function definition for ‘subGraph’
    FAiR_Mcd: no visible global function definition for ‘CovMcd’
    FAiR_blockanator: no visible global function definition for ‘gmessage’
    FAiR_bootstrap2dppMatrix: no visible global function definition for
     ‘Matrix’
    FAiR_bounds_coef: no visible global function definition for ‘gmessage’
    FAiR_bounds_cormat: no visible global function definition for
     ‘gmessage’
    FAiR_cor.rank: no visible global function definition for ‘Diagonal’
    FAiR_cov.shrink: no visible global function definition for ‘cov.shrink’
    FAiR_cov.shrink: no visible global function definition for ‘Diagonal’
    FAiR_edit: no visible global function definition for ‘ggroup’
    FAiR_edit: no visible global function definition for ‘glabel’
    FAiR_edit: no visible global function definition for ‘gdf’
    FAiR_edit: no visible global function definition for ‘gbasicdialog’
    FAiR_edit: no visible global function definition for ‘guiToolkit’
    FAiR_equality_restrictions: no visible global function definition for
     ‘gmessage’
    FAiR_get_answer: no visible global function definition for ‘ggroup’
    FAiR_get_answer: no visible global function definition for ‘glabel’
    FAiR_get_answer: no visible global function definition for ‘gseparator’
    FAiR_get_answer: no visible global function definition for ‘gradio’
    FAiR_get_answer: no visible global function definition for ‘gslider’
    FAiR_get_answer: no visible global function definition for
     ‘gcheckboxgroup’
    FAiR_get_answer: no visible global function definition for
     ‘gbasicdialog’
    FAiR_get_answer: no visible global function definition for ‘guiToolkit’
    FAiR_get_mapping_rule_args: no visible global function definition for
     ‘gmessage’
    FAiR_hetcor: no visible global function definition for ‘hetcor’
    FAiR_hetcor: no visible global function definition for ‘Diagonal’
    FAiR_indicators_FC: no visible global function definition for
     ‘gmessage’
    FAiR_make_manifest_list: no visible global function definition for
     ‘Diagonal’
    FAiR_make_target: no visible global function definition for ‘gmessage’
    FAiR_mlest: no visible global function definition for ‘mlest’
    FAiR_order_FC: no visible global function definition for ‘gmessage’
    FAiR_peg_coefficients: no visible global function definition for
     ‘gmessage’
    FAiR_quick_Rotate: no visible global function definition for ‘targetT’
    FAiR_quick_Rotate: no visible global function definition for ‘GPForth’
    FAiR_quick_Rotate: no visible global function definition for ‘targetQ’
    FAiR_quick_Rotate: no visible global function definition for ‘GPFoblq’
    create_FAobject,restrictions.independent-manifest.basic: no visible
     binding for global variable ‘factors’
    create_start,restrictions.1storder-manifest.basic: no visible global
     function definition for ‘GPForth’
    create_start,restrictions.2ndorder-manifest.basic: no visible global
     function definition for ‘GPForth’
    create_start,restrictions.general-manifest.basic: no visible global
     function definition for ‘GPForth’
    make_manifest,formula-data.frame-missing: no visible binding for global
     variable ‘Z’
    make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing:
     no visible binding for global variable ‘manfiest’
    make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing:
     no visible binding for global variable ‘criteria’
    plot,FA-missing: no visible global function definition for ‘addEdge’
    plot,FA-missing: no visible binding for global variable ‘toDot’
    plot,FA.2ndorder-missing: no visible global function definition for
     ‘addEdge’
    plot,FA.2ndorder-missing: no visible global function definition for
     ‘join’
    plot,FA.2ndorder-missing: no visible binding for global variable
     ‘toDot’
    plot,FA.general-missing: no visible global function definition for
     ‘join’
    plot,FA.general-missing: no visible binding for global variable ‘toDot’
    profile,FA.general: no visible binding for global variable ‘p’
    screeplot,FA: no visible global function definition for ‘parallel’
    screeplot,FA: no visible global function definition for ‘nScree’
    screeplot,FA: no visible global function definition for ‘plotnScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘parallel’
    screeplot,manifest.basic: no visible global function definition for
     ‘nScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘plotnScree’
    screeplot,manifest.data: no visible global function definition for
     ‘parallel’
    screeplot,manifest.data: no visible global function definition for
     ‘nScree’
    screeplot,manifest.data: no visible global function definition for
     ‘plotnScree’
    show,manifest.data: no visible global function definition for
     ‘mshapiro.test’
    show,manifest.data: no visible global function definition for
     ‘mvnorm.etest’
    uniquenesses,restrictions: no visible binding for global variable
     ‘restrictions’
    Undefined global functions or variables:
     CovMcd Diagonal GPFoblq GPForth Matrix Z addEdge cov.shrink criteria
     factors gbasicdialog gcheckboxgroup gdf ggroup glabel gmessage gradio
     gseparator gslider guiToolkit hetcor huberM join manfiest mlest
     mshapiro.test mvnorm.etest nScree nodes p parallel plotnScree
     restrictions subGraph targetQ targetT toDot
Flavor: r-devel-osx-x86_64-clang

Version: 0.4-15
Check: R code for possible problems
Result: NOTE
    FAiR_ADF: no visible global function definition for ‘Matrix’
    FAiR_ADF_robust: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘huberM’
    FAiR_DAG: no visible global function definition for ‘nodes’
    FAiR_DAG: no visible global function definition for ‘addEdge’
    FAiR_DAG: no visible global function definition for ‘subGraph’
    FAiR_Mcd: no visible global function definition for ‘CovMcd’
    FAiR_blockanator: no visible global function definition for ‘gmessage’
    FAiR_bootstrap2dppMatrix: no visible global function definition for
     ‘Matrix’
    FAiR_bounds_coef: no visible global function definition for ‘gmessage’
    FAiR_bounds_cormat: no visible global function definition for
     ‘gmessage’
    FAiR_cor.rank: no visible global function definition for ‘Diagonal’
    FAiR_cov.shrink: no visible global function definition for ‘cov.shrink’
    FAiR_cov.shrink: no visible global function definition for ‘Diagonal’
    FAiR_edit: no visible global function definition for ‘ggroup’
    FAiR_edit: no visible global function definition for ‘glabel’
    FAiR_edit: no visible global function definition for ‘gdf’
    FAiR_edit: no visible global function definition for ‘gbasicdialog’
    FAiR_edit: no visible global function definition for ‘guiToolkit’
    FAiR_equality_restrictions: no visible global function definition for
     ‘gmessage’
    FAiR_get_answer: no visible global function definition for ‘ggroup’
    FAiR_get_answer: no visible global function definition for ‘glabel’
    FAiR_get_answer: no visible global function definition for ‘gseparator’
    FAiR_get_answer: no visible global function definition for ‘gradio’
    FAiR_get_answer: no visible global function definition for ‘gslider’
    FAiR_get_answer: no visible global function definition for
     ‘gcheckboxgroup’
    FAiR_get_answer: no visible global function definition for
     ‘gbasicdialog’
    FAiR_get_answer: no visible global function definition for ‘guiToolkit’
    FAiR_get_mapping_rule_args: no visible global function definition for
     ‘gmessage’
    FAiR_hetcor: no visible global function definition for ‘hetcor’
    FAiR_hetcor: no visible global function definition for ‘Diagonal’
    FAiR_indicators_FC: no visible global function definition for
     ‘gmessage’
    FAiR_make_manifest_list: no visible global function definition for
     ‘Diagonal’
    FAiR_make_target: no visible global function definition for ‘gmessage’
    FAiR_mlest: no visible global function definition for ‘mlest’
    FAiR_order_FC: no visible global function definition for ‘gmessage’
    FAiR_peg_coefficients: no visible global function definition for
     ‘gmessage’
    FAiR_quick_Rotate: no visible global function definition for ‘targetT’
    FAiR_quick_Rotate: no visible global function definition for ‘GPForth’
    FAiR_quick_Rotate: no visible global function definition for ‘targetQ’
    FAiR_quick_Rotate: no visible global function definition for ‘GPFoblq’
    create_FAobject,restrictions.independent-manifest.basic : .local: no
     visible binding for global variable ‘factors’
    create_start,restrictions.1storder-manifest.basic : .local: no visible
     global function definition for ‘GPForth’
    create_start,restrictions.2ndorder-manifest.basic : .local: no visible
     global function definition for ‘GPForth’
    create_start,restrictions.general-manifest.basic : .local: no visible
     global function definition for ‘GPForth’
    make_manifest,formula-data.frame-missing : .local: no visible binding
     for global variable ‘Z’
    make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing
     : .local: no visible binding for global variable ‘manfiest’
    make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing
     : .local: no visible binding for global variable ‘criteria’
    plot,FA-missing : .local: no visible global function definition for
     ‘addEdge’
    plot,FA-missing : .local: no visible binding for global variable
     ‘toDot’
    plot,FA.2ndorder-missing : .local: no visible global function
     definition for ‘addEdge’
    plot,FA.2ndorder-missing : .local: no visible global function
     definition for ‘join’
    plot,FA.2ndorder-missing : .local: no visible binding for global
     variable ‘toDot’
    plot,FA.general-missing : .local: no visible global function definition
     for ‘join’
    plot,FA.general-missing : .local: no visible binding for global
     variable ‘toDot’
    profile,FA.general : .local: no visible binding for global variable ‘p’
    screeplot,FA: no visible global function definition for ‘parallel’
    screeplot,FA: no visible global function definition for ‘nScree’
    screeplot,FA: no visible global function definition for ‘plotnScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘parallel’
    screeplot,manifest.basic: no visible global function definition for
     ‘nScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘plotnScree’
    screeplot,manifest.data: no visible global function definition for
     ‘parallel’
    screeplot,manifest.data: no visible global function definition for
     ‘nScree’
    screeplot,manifest.data: no visible global function definition for
     ‘plotnScree’
    show,manifest.data: no visible global function definition for
     ‘mshapiro.test’
    show,manifest.data: no visible global function definition for
     ‘mvnorm.etest’
    uniquenesses,restrictions : .local: no visible binding for global
     variable ‘restrictions’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-15
Check: R code for possible problems
Result: NOTE
    FAiR_ADF: no visible global function definition for ‘Matrix’
    FAiR_ADF_robust: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘CovMcd’
    FAiR_ADF_unbiased: no visible global function definition for ‘huberM’
    FAiR_DAG: no visible global function definition for ‘nodes’
    FAiR_DAG: no visible global function definition for ‘addEdge’
    FAiR_DAG: no visible global function definition for ‘subGraph’
    FAiR_Mcd: no visible global function definition for ‘CovMcd’
    FAiR_blockanator: no visible global function definition for ‘gmessage’
    FAiR_bootstrap2dppMatrix: no visible global function definition for
     ‘Matrix’
    FAiR_bounds_coef: no visible global function definition for ‘gmessage’
    FAiR_bounds_cormat: no visible global function definition for
     ‘gmessage’
    FAiR_cor.rank: no visible global function definition for ‘Diagonal’
    FAiR_cov.shrink: no visible global function definition for ‘cov.shrink’
    FAiR_cov.shrink: no visible global function definition for ‘Diagonal’
    FAiR_edit: no visible global function definition for ‘ggroup’
    FAiR_edit: no visible global function definition for ‘glabel’
    FAiR_edit: no visible global function definition for ‘gdf’
    FAiR_edit: no visible global function definition for ‘gbasicdialog’
    FAiR_edit: no visible global function definition for ‘guiToolkit’
    FAiR_equality_restrictions: no visible global function definition for
     ‘gmessage’
    FAiR_get_answer: no visible global function definition for ‘ggroup’
    FAiR_get_answer: no visible global function definition for ‘glabel’
    FAiR_get_answer: no visible global function definition for ‘gseparator’
    FAiR_get_answer: no visible global function definition for ‘gradio’
    FAiR_get_answer: no visible global function definition for ‘gslider’
    FAiR_get_answer: no visible global function definition for
     ‘gcheckboxgroup’
    FAiR_get_answer: no visible global function definition for
     ‘gbasicdialog’
    FAiR_get_answer: no visible global function definition for ‘guiToolkit’
    FAiR_get_mapping_rule_args: no visible global function definition for
     ‘gmessage’
    FAiR_hetcor: no visible global function definition for ‘hetcor’
    FAiR_hetcor: no visible global function definition for ‘Diagonal’
    FAiR_indicators_FC: no visible global function definition for
     ‘gmessage’
    FAiR_make_manifest_list: no visible global function definition for
     ‘Diagonal’
    FAiR_make_target: no visible global function definition for ‘gmessage’
    FAiR_mlest: no visible global function definition for ‘mlest’
    FAiR_order_FC: no visible global function definition for ‘gmessage’
    FAiR_peg_coefficients: no visible global function definition for
     ‘gmessage’
    FAiR_quick_Rotate: no visible global function definition for ‘targetT’
    FAiR_quick_Rotate: no visible global function definition for ‘GPForth’
    FAiR_quick_Rotate: no visible global function definition for ‘targetQ’
    FAiR_quick_Rotate: no visible global function definition for ‘GPFoblq’
    screeplot,FA: no visible global function definition for ‘parallel’
    screeplot,FA: no visible global function definition for ‘nScree’
    screeplot,FA: no visible global function definition for ‘plotnScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘parallel’
    screeplot,manifest.basic: no visible global function definition for
     ‘nScree’
    screeplot,manifest.basic: no visible global function definition for
     ‘plotnScree’
    screeplot,manifest.data: no visible global function definition for
     ‘parallel’
    screeplot,manifest.data: no visible global function definition for
     ‘nScree’
    screeplot,manifest.data: no visible global function definition for
     ‘plotnScree’
    show,manifest.data: no visible global function definition for
     ‘mshapiro.test’
    show,manifest.data: no visible global function definition for
     ‘mvnorm.etest’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4-15
Check: foreign function calls
Result: NOTE
    Calls with DUP != TRUE:
     .C(FAiR_QD_sum, sum = numeric(1), x = x, middle = middle, length = length(x),
     DUP = FALSE, NAOK = TRUE)
     .C(FAiR_QD_grad, grad = numeric(length_x), x = x, middle = middle,
     length = length_x, holder = numeric(length_x), DUP = FALSE,
     NAOK = TRUE)
     .C("exhaustive_mve", number = as.integer(0), combos = combos,
     lengthcombos = length(combos), Xdata = as.double(X), Xrow = nrow(X),
     Xcol = ncol(X), DUP = FALSE, PACKAGE = "FAiR")
    DUP = FALSE is deprecated and will be disabled in future versions of R.
Flavor: r-oldrel-windows-ix86+x86_64