CRAN Package Check Results for Package RAM

Last updated on 2015-11-20 00:47:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.2.1 6.82 99.13 105.94 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.1 210.33 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 204.71 NOTE
r-devel-osx-x86_64-clang 1.2.1 221.51 OK
r-devel-windows-ix86+x86_64 1.2.1 34.00 177.00 211.00 NOTE
r-patched-linux-x86_64 1.2.1 6.03 103.92 109.95 OK
r-patched-solaris-sparc 1.2.1 1360.30 OK
r-patched-solaris-x86 1.2.1 272.30 OK
r-release-linux-x86_64 1.2.1 6.50 102.57 109.07 OK
r-release-osx-x86_64-mavericks 1.2.1 NOTE
r-release-windows-ix86+x86_64 1.2.1 26.00 206.00 232.00 OK
r-oldrel-windows-ix86+x86_64 1.2.1 53.00 367.00 420.00 OK

Check Details

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    .CharToFac: no visible global function definition for ‘na.omit’
    .NNF.col : <anonymous>: no visible global function definition for
     ‘na.omit’
    .abundance.base2: no visible global function definition for ‘par’
    .abundance.base2: no visible global function definition for ‘layout’
    .abundance.base2: no visible global function definition for ‘plot.new’
    .abundance.base2: no visible global function definition for ‘title’
    .abundance.base2: no visible global function definition for
     ‘grey.colors’
    .abundance.base2: no visible binding for global variable ‘barplot’
    .abundance.base2: no visible global function definition for ‘axis’
    .abundance.base2: no visible binding for global variable ‘legend’
    .abundance.base2: no visible global function definition for ‘dev.off’
    .abundance.ggplot2: no visible global function definition for
     ‘colorRampPalette’
    .abundance.ggplot2.meta: no visible global function definition for
     ‘as.formula’
    .abundance.ggplot2.meta: no visible global function definition for
     ‘colorRampPalette’
    .analysis.helper: no visible binding for global variable ‘na.exclude’
    .analysis.helper: no visible global function definition for ‘formula’
    .cols: no visible global function definition for ‘colorRampPalette’
    .fac.col : <anonymous>: no visible global function definition for
     ‘na.omit’
    .factor.settings: no visible global function definition for
     ‘colorRampPalette’
    .group.rank: no visible global function definition for ‘aggregate’
    .group.rank2: no visible global function definition for ‘aggregate’
    .level1.col : <anonymous>: no visible global function definition for
     ‘na.omit’
    .num.col : <anonymous>: no visible global function definition for
     ‘na.omit’
    .pCLUST: no visible global function definition for ‘rainbow’
    .pCLUST: no visible global function definition for ‘par’
    .pCLUST: no visible global function definition for ‘plot’
    .pCLUST: no visible global function definition for ‘runif’
    .pCLUST : .Col.group: no visible global function definition for
     ‘is.leaf’
    .pCLUST: no visible global function definition for ‘as.dendrogram’
    .pCLUST: no visible global function definition for ‘dendrapply’
    .pcoa.base: no visible global function definition for ‘par’
    .pcoa.base: no visible global function definition for ‘layout’
    .pcoa.base: no visible binding for global variable ‘plot’
    .pcoa.base: no visible global function definition for ‘text’
    .pcoa.base: no visible global function definition for ‘plot.new’
    .pcoa.base: no visible binding for global variable ‘legend’
    .pcoa.base: no visible global function definition for ‘dev.off’
    .pcoa.ggplot2 : <anonymous>: no visible global function definition for
     ‘runif’
    .pcoa.ggplot2: no visible global function definition for
     ‘colorRampPalette’
    .perform_ord: no visible global function definition for ‘anova’
    .prune.biplot: no visible global function definition for ‘anova’
    .subset.otu: no visible global function definition for ‘aggregate’
    .top.samples.base: no visible global function definition for ‘par’
    .top.samples.base: no visible global function definition for ‘layout’
    .top.samples.base: no visible global function definition for
     ‘grey.colors’
    .top.samples.base: no visible global function definition for ‘boxplot’
    .top.samples.base: no visible global function definition for ‘legend’
    .top.samples.base: no visible global function definition for ‘title’
    .top.samples.base: no visible global function definition for ‘dev.off’
    .top.samples.ggplot2: no visible global function definition for
     ‘colorRampPalette’
    .valid.meta.NB: no visible global function definition for ‘na.omit’
    LCA.OTU : <anonymous>: no visible global function definition for ‘tail’
    META.clust: no visible global function definition for ‘hclust’
    META.clust: no visible global function definition for ‘cutree’
    META.clust: no visible global function definition for ‘dev.off’
    OTU.ord: no visible global function definition for ‘na.omit’
    OTU.ord: no visible global function definition for ‘colorRampPalette’
    RAM.pal: no visible global function definition for ‘colorRampPalette’
    Taxa.ord: no visible global function definition for ‘colorRampPalette’
    Taxa.ord : <anonymous>: no visible global function definition for
     ‘runif’
    assist.NB: no visible global function definition for ‘as.formula’
    assist.NB: no visible global function definition for ‘plot’
    assist.NB: no visible global function definition for ‘update’
    assist.NB: no visible global function definition for ‘anova’
    assist.cca: no visible binding for global variable ‘na.exclude’
    assist.rda: no visible binding for global variable ‘na.exclude’
    correlation: no visible global function definition for ‘cor’
    correlation: no visible global function definition for
     ‘colorRampPalette’
    correlation: no visible global function definition for ‘dev.off’
    data.clust: no visible global function definition for ‘hclust’
    data.clust: no visible global function definition for ‘par’
    data.clust: no visible global function definition for ‘cutree’
    data.clust: no visible global function definition for ‘dev.off’
    dissim.GOF: no visible global function definition for ‘cmdscale’
    dissim.GOF.plot: no visible global function definition for ‘par’
    dissim.GOF.plot: no visible global function definition for ‘plot’
    dissim.GOF.plot: no visible global function definition for ‘dev.off’
    dissim.clust: no visible global function definition for ‘hclust’
    dissim.clust.plot: no visible global function definition for ‘par’
    dissim.clust.plot: no visible global function definition for ‘plot’
    dissim.clust.plot: no visible global function definition for ‘dev.off’
    dissim.eig.plot: no visible global function definition for ‘par’
    dissim.eig.plot: no visible global function definition for ‘barplot’
    dissim.eig.plot: no visible global function definition for ‘dev.off’
    dissim.heatmap: no visible binding for global variable ‘legend’
    dissim.heatmap: no visible global function definition for ‘dev.off’
    dissim.ord.plot: no visible global function definition for ‘par’
    dissim.ord.plot: no visible global function definition for ‘plot’
    dissim.ord.plot: no visible global function definition for ‘dev.off’
    dissim.pvar.plot: no visible global function definition for ‘par’
    dissim.pvar.plot: no visible global function definition for ‘barplot’
    dissim.pvar.plot: no visible global function definition for ‘dev.off’
    dissim.tree: no visible global function definition for ‘hclust’
    dissim.tree: no visible global function definition for ‘cophenetic’
    dissim.tree.plot: no visible global function definition for ‘par’
    dissim.tree.plot: no visible global function definition for ‘plot’
    dissim.tree.plot: no visible global function definition for ‘dev.off’
    envis.NB: no visible global function definition for ‘predict’
    envis.NB: no visible global function definition for ‘as.formula’
    factor.abundance: no visible global function definition for
     ‘colorRampPalette’
    factor.abundance: no visible global function definition for ‘dev.off’
    group.OTU: no visible global function definition for ‘aggregate’
    group.Taxa.bar: no visible global function definition for ‘aggregate’
    group.diversity: no visible global function definition for ‘as.formula’
    group.heatmap: no visible global function definition for ‘hclust’
    group.heatmap: no visible global function definition for
     ‘colorRampPalette’
    group.heatmap: no visible global function definition for
     ‘as.dendrogram’
    group.heatmap: no visible global function definition for ‘plot’
    group.heatmap: no visible global function definition for ‘dev.off’
    group.heatmap.simple: no visible global function definition for
     ‘colorRampPalette’
    group.heatmap.simple: no visible binding for global variable ‘legend’
    group.heatmap.simple: no visible global function definition for
     ‘dev.off’
    group.indicators: no visible global function definition for
     ‘as.formula’
    group.indicators: no visible global function definition for
     ‘colorRampPalette’
    group.rich: no visible global function definition for ‘complete.cases’
    group.spatial: no visible global function definition for ‘aggregate’
    group.spec: no visible global function definition for ‘complete.cases’
    group.temporal: no visible global function definition for ‘aggregate’
    group.temporal: no visible global function definition for ‘dev.off’
    group.venn: no visible global function definition for ‘dev.off’
    phylo_taxonomy: no visible global function definition for ‘aggregate’
    phylo_taxonomy: no visible global function definition for ‘as.formula’
    phylo_taxonomy: no visible global function definition for ‘plot’
    phylog_taxonomy: no visible global function definition for ‘aggregate’
    phylog_taxonomy: no visible global function definition for ‘plot’
    phylog_taxonomy: no visible global function definition for ‘par’
    read.OTU: no visible global function definition for ‘read.table’
    read.meta: no visible global function definition for ‘read.table’
    sample.locations: no visible global function definition for ‘aggregate’
    sample.map: no visible global function definition for ‘dev.off’
    sample.sites: no visible global function definition for ‘dev.off’
    seq_var: no visible global function definition for ‘write.csv’
    tax.abund: no visible global function definition for ‘aggregate’
    write.data: no visible global function definition for ‘write.csv’
    Undefined global functions or variables:
     aggregate anova as.dendrogram as.formula axis barplot boxplot
     cmdscale colorRampPalette complete.cases cophenetic cor cutree
     dendrapply dev.off formula grey.colors hclust is.leaf layout legend
     na.exclude na.omit par plot plot.new predict rainbow read.table runif
     tail text title update write.csv
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.off", "grey.colors",
     "rainbow")
     importFrom("graphics", "axis", "barplot", "boxplot", "layout",
     "legend", "par", "plot", "plot.new", "text", "title")
     importFrom("stats", "aggregate", "anova", "as.dendrogram",
     "as.formula", "cmdscale", "complete.cases", "cophenetic",
     "cor", "cutree", "dendrapply", "formula", "hclust",
     "is.leaf", "na.exclude", "na.omit", "predict", "runif",
     "update")
     importFrom("utils", "read.table", "tail", "write.csv")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Heatplus’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.2.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘Heatplus’
Flavor: r-release-osx-x86_64-mavericks