CRAN Package Check Results for Package sna

Last updated on 2015-11-20 00:47:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 2.3-2 5.95 58.22 64.17 NOTE
r-devel-linux-x86_64-fedora-clang 2.3-2 122.96 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3-2 113.90 NOTE
r-devel-osx-x86_64-clang 2.3-2 135.87 NOTE
r-devel-windows-ix86+x86_64 2.3-2 41.00 128.00 169.00 NOTE
r-patched-linux-x86_64 2.3-2 5.80 61.62 67.42 NOTE
r-patched-solaris-sparc 2.3-2 816.30 NOTE
r-patched-solaris-x86 2.3-2 144.50 NOTE
r-release-linux-x86_64 2.3-2 5.75 62.18 67.93 NOTE
r-release-osx-x86_64-mavericks 2.3-2 NOTE
r-release-windows-ix86+x86_64 2.3-2 40.00 139.00 179.00 NOTE
r-oldrel-windows-ix86+x86_64 2.3-2 36.00 153.00 189.00 NOTE

Check Details

Version: 2.3-2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘SparseM’ ‘network’ ‘numDeriv’ ‘rgl’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.3-2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     coef.bn coef.lnam plot.bbnam plot.bbnam.actor plot.bbnam.fixed
     plot.bbnam.pooled plot.blockmodel plot.bn plot.cug.test plot.cugtest
     plot.equiv.clust plot.lnam plot.qaptest plot.sociomatrix
     print.bayes.factor print.bbnam print.bbnam.actor print.bbnam.fixed
     print.bbnam.pooled print.blockmodel print.bn print.cug.test
     print.cugtest print.equiv.clust print.lnam print.netcancor
     print.netlm print.netlogit print.qaptest print.summary.bayes.factor
     print.summary.bbnam print.summary.bbnam.actor
     print.summary.bbnam.fixed print.summary.bbnam.pooled
     print.summary.blockmodel print.summary.bn print.summary.brokerage
     print.summary.cugtest print.summary.lnam print.summary.netcancor
     print.summary.netlm print.summary.netlogit print.summary.qaptest
     summary.bayes.factor summary.bbnam summary.bbnam.actor
     summary.bbnam.fixed summary.bbnam.pooled summary.blockmodel
     summary.bn summary.brokerage summary.cugtest summary.lnam
     summary.netcancor summary.netlm summary.netlogit summary.qaptest
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.3-2
Check: R code for possible problems
Result: NOTE
    as.edgelist.sna: no visible global function definition for
     ‘as.matrix.network.edgelist’
    as.edgelist.sna: no visible binding for global variable
     ‘as.matrix.network.edgelist’
    as.edgelist.sna: no visible global function definition for ‘has.loops’
    as.edgelist.sna: no visible global function definition for
     ‘is.directed’
    as.edgelist.sna: no visible global function definition for
     ‘network.size’
    as.edgelist.sna: no visible global function definition for
     ‘network.vertex.names’
    as.edgelist.sna: no visible global function definition for
     ‘is.bipartite’
    as.edgelist.sna: no visible global function definition for
     ‘get.network.attribute’
    as.sociomatrix.sna: no visible global function definition for
     ‘as.sociomatrix’
    bbnam.actor: no visible global function definition for ‘runif’
    bbnam.actor: no visible global function definition for ‘rbeta’
    bbnam.bf: no visible global function definition for ‘var’
    bbnam.pooled: no visible global function definition for ‘runif’
    bbnam.pooled: no visible global function definition for ‘rbeta’
    blockmodel: no visible global function definition for ‘cutree’
    blockmodel: no visible global function definition for ‘median’
    bn: no visible global function definition for ‘optim’
    equiv.clust: no visible global function definition for ‘hclust’
    equiv.clust: no visible global function definition for ‘as.dist’
    event2dichot: no visible global function definition for ‘quantile’
    gclust.boxstats: no visible global function definition for ‘cutree’
    gclust.boxstats: no visible global function definition for ‘boxplot’
    gclust.centralgraph: no visible global function definition for ‘cutree’
    gcor: no visible global function definition for ‘cor’
    gcov: no visible global function definition for ‘cov’
    gdist.plotdiff: no visible global function definition for ‘dist’
    gdist.plotdiff: no visible global function definition for ‘as.dist’
    gdist.plotdiff: no visible global function definition for ‘plot’
    gdist.plotdiff: no visible global function definition for ‘abline’
    gdist.plotdiff: no visible global function definition for ‘lm’
    gdist.plotstats: no visible global function definition for ‘cmdscale’
    gdist.plotstats: no visible global function definition for ‘as.dist’
    gdist.plotstats: no visible global function definition for ‘plot’
    gdist.plotstats: no visible global function definition for ‘lines’
    gdist.plotstats: no visible global function definition for ‘text’
    gplot: no visible global function definition for ‘par’
    gplot: no visible global function definition for ‘plot’
    gplot: no visible global function definition for ‘strwidth’
    gplot: no visible global function definition for ‘strheight’
    gplot: no visible global function definition for ‘rect’
    gplot: no visible global function definition for ‘text’
    gplot: no visible global function definition for ‘locator’
    gplot.arrow : make.coords: no visible global function definition for
     ‘par’
    gplot.arrow: no visible global function definition for ‘polygon’
    gplot.layout.kamadakawai: no visible global function definition for
     ‘rnorm’
    gplot.layout.mds: no visible global function definition for ‘dist’
    gplot.layout.mds: no visible global function definition for ‘cmdscale’
    gplot.layout.princoord: no visible global function definition for ‘cor’
    gplot.layout.princoord: no visible global function definition for ‘cov’
    gplot.layout.random: no visible global function definition for ‘runif’
    gplot.layout.random: no visible global function definition for ‘rnorm’
    gplot.layout.spring: no visible global function definition for ‘dist’
    gplot.layout.target: no visible global function definition for ‘runif’
    gplot.loop: no visible global function definition for ‘polygon’
    gplot.target: no visible global function definition for ‘segments’
    gplot.target: no visible global function definition for ‘text’
    gplot.vertex: no visible global function definition for ‘polygon’
    gplot3d: no visible global function definition for ‘rgl.clear’
    gplot3d: no visible global function definition for ‘rgl.bbox’
    gplot3d: no visible global function definition for ‘rgl.bg’
    gplot3d: no visible global function definition for ‘dist’
    gplot3d: no visible global function definition for ‘rgl.spheres’
    gplot3d: no visible global function definition for ‘rgl.texts’
    gplot3d.arrow: no visible global function definition for
     ‘rgl.triangles’
    gplot3d.layout.fruchtermanreingold: no visible global function
     definition for ‘runif’
    gplot3d.layout.kamadakawai: no visible global function definition for
     ‘rnorm’
    gplot3d.layout.mds: no visible global function definition for ‘dist’
    gplot3d.layout.mds: no visible global function definition for
     ‘cmdscale’
    gplot3d.layout.princoord: no visible global function definition for
     ‘cor’
    gplot3d.layout.princoord: no visible global function definition for
     ‘cov’
    gplot3d.layout.random: no visible global function definition for
     ‘runif’
    gplot3d.layout.random: no visible global function definition for
     ‘rnorm’
    gplot3d.loop: no visible global function definition for ‘rgl.triangles’
    gscor: no visible global function definition for ‘cor’
    gscor : <anonymous>: no visible global function definition for ‘cor’
    gscov: no visible global function definition for ‘cov’
    gscov : <anonymous>: no visible global function definition for ‘cov’
    gtrans : adjisok: no visible global function definition for
     ‘network.size’
    gtrans : adjisok: no visible global function definition for
     ‘network.edgecount’
    gtrans : <anonymous>: no visible global function definition for ‘var’
    gtrans : <anonymous>: no visible global function definition for ‘cor’
    lab.optimize.anneal: no visible global function definition for ‘runif’
    lab.optimize.gumbel: no visible global function definition for
     ‘quantile’
    lnam : estimate: no visible global function definition for ‘optim’
    lnam : infomat: no visible global function definition for ‘hessian’
    lnam: no visible global function definition for ‘dnorm’
    lnam: no visible global function definition for ‘var’
    make.stochastic: no visible global function definition for ‘rnorm’
    make.stochastic: no visible global function definition for ‘runif’
    nacf: no visible global function definition for ‘var’
    netcancor: no visible global function definition for ‘cancor’
    netlm: no visible global function definition for ‘pt’
    netlogit : gfit: no visible global function definition for ‘glm.fit’
    netlogit : gfit: no visible global function definition for ‘binomial’
    netlogit: no visible global function definition for ‘pt’
    plot.bbnam.actor: no visible global function definition for ‘par’
    plot.bbnam.actor: no visible global function definition for
     ‘dev.interactive’
    plot.bbnam.actor: no visible global function definition for ‘plot’
    plot.bbnam.actor: no visible global function definition for ‘density’
    plot.bbnam.actor: no visible global function definition for ‘abline’
    plot.bbnam.actor: no visible global function definition for ‘quantile’
    plot.bbnam.actor: no visible global function definition for ‘hist’
    plot.bbnam.fixed: no visible global function definition for ‘par’
    plot.bbnam.pooled: no visible global function definition for ‘par’
    plot.bbnam.pooled: no visible global function definition for
     ‘dev.interactive’
    plot.bbnam.pooled: no visible global function definition for ‘plot’
    plot.bbnam.pooled: no visible global function definition for ‘density’
    plot.bbnam.pooled: no visible global function definition for ‘abline’
    plot.bbnam.pooled: no visible global function definition for ‘quantile’
    plot.bbnam.pooled: no visible global function definition for ‘hist’
    plot.blockmodel: no visible global function definition for ‘par’
    plot.blockmodel: no visible global function definition for ‘abline’
    plot.bn: no visible global function definition for ‘par’
    plot.bn: no visible global function definition for ‘plot’
    plot.bn: no visible global function definition for ‘segments’
    plot.bn: no visible global function definition for ‘points’
    plot.bn: no visible global function definition for ‘axis’
    plot.bn: no visible global function definition for ‘lines’
    plot.cug.test: no visible global function definition for ‘hist’
    plot.cug.test: no visible global function definition for ‘abline’
    plot.cugtest: no visible global function definition for ‘plot’
    plot.cugtest: no visible global function definition for ‘density’
    plot.cugtest: no visible global function definition for ‘hist’
    plot.cugtest: no visible global function definition for ‘abline’
    plot.equiv.clust: no visible global function definition for ‘plot’
    plot.lnam: no visible global function definition for ‘residuals’
    plot.lnam: no visible global function definition for ‘fitted’
    plot.lnam: no visible global function definition for ‘sd’
    plot.lnam: no visible global function definition for ‘par’
    plot.lnam: no visible global function definition for ‘plot’
    plot.lnam: no visible global function definition for ‘abline’
    plot.lnam: no visible global function definition for ‘qqnorm’
    plot.lnam: no visible global function definition for ‘qqline’
    plot.lnam: no visible global function definition for ‘cmdscale’
    plot.lnam: no visible global function definition for ‘as.dist’
    plot.qaptest: no visible global function definition for ‘plot’
    plot.qaptest: no visible global function definition for ‘density’
    plot.qaptest: no visible global function definition for ‘hist’
    plot.qaptest: no visible global function definition for ‘abline’
    plot.sociomatrix: no visible global function definition for ‘plot’
    plot.sociomatrix: no visible global function definition for ‘rect’
    plot.sociomatrix: no visible global function definition for ‘gray’
    plot.sociomatrix: no visible global function definition for ‘text’
    potscalered.mcmc: no visible binding for global variable ‘var’
    print.bbnam.actor: no visible global function definition for ‘quantile’
    print.bbnam.pooled: no visible global function definition for
     ‘quantile’
    print.bn: no visible global function definition for ‘printCoefmat’
    print.lnam: no visible global function definition for ‘coef’
    print.netlm: no visible global function definition for ‘fitted’
    print.netlm: no visible global function definition for ‘resid’
    print.netlm: no visible global function definition for ‘pf’
    print.netlogit: no visible global function definition for ‘pchisq’
    print.summary.bbnam.actor: no visible global function definition for
     ‘quantile’
    print.summary.bbnam.actor: no visible global function definition for
     ‘median’
    print.summary.bbnam.actor: no visible global function definition for
     ‘IQR’
    print.summary.bbnam.pooled: no visible global function definition for
     ‘quantile’
    print.summary.bbnam.pooled: no visible global function definition for
     ‘median’
    print.summary.bbnam.pooled: no visible global function definition for
     ‘IQR’
    print.summary.bn: no visible global function definition for
     ‘printCoefmat’
    print.summary.bn: no visible global function definition for ‘pnorm’
    print.summary.bn: no visible global function definition for ‘pchisq’
    print.summary.brokerage: no visible global function definition for
     ‘pnorm’
    print.summary.brokerage: no visible global function definition for
     ‘printCoefmat’
    print.summary.cugtest: no visible global function definition for
     ‘quantile’
    print.summary.lnam: no visible binding for global variable ‘quantile’
    print.summary.lnam: no visible global function definition for
     ‘quantile’
    print.summary.lnam: no visible global function definition for ‘coef’
    print.summary.lnam: no visible global function definition for ‘pnorm’
    print.summary.lnam: no visible global function definition for
     ‘printCoefmat’
    print.summary.netcancor: no visible binding for global variable
     ‘quantile’
    print.summary.netlm: no visible global function definition for
     ‘quantile’
    print.summary.netlm: no visible global function definition for ‘fitted’
    print.summary.netlm: no visible global function definition for ‘resid’
    print.summary.netlm: no visible global function definition for ‘pf’
    print.summary.netlm: no visible binding for global variable ‘quantile’
    print.summary.netlogit: no visible global function definition for
     ‘pchisq’
    print.summary.netlogit: no visible binding for global variable
     ‘quantile’
    print.summary.qaptest: no visible global function definition for
     ‘quantile’
    pstar: no visible global function definition for ‘as.formula’
    pstar: no visible global function definition for ‘glm’
    rguman: no visible global function definition for ‘rbinom’
    rgws: no visible global function definition for ‘dist’
    sdmat: no visible global function definition for ‘as.dist’
    sedist: no visible global function definition for ‘cor’
    sociomatrixplot: no visible global function definition for ‘plot’
    sociomatrixplot: no visible global function definition for ‘rect’
    sociomatrixplot: no visible global function definition for ‘gray’
    sociomatrixplot: no visible global function definition for ‘text’
    Undefined global functions or variables:
     IQR abline as.dist as.formula as.matrix.network.edgelist
     as.sociomatrix axis binomial boxplot cancor cmdscale coef cor cov
     cutree density dev.interactive dist dnorm fitted
     get.network.attribute glm glm.fit gray has.loops hclust hessian hist
     is.bipartite is.directed lines lm locator median network.edgecount
     network.size network.vertex.names optim par pchisq pf plot pnorm
     points polygon printCoefmat pt qqline qqnorm quantile rbeta rbinom
     rect resid residuals rgl.bbox rgl.bg rgl.clear rgl.spheres rgl.texts
     rgl.triangles rnorm runif sd segments strheight strwidth text var
    Consider adding
     importFrom("grDevices", "dev.interactive", "gray")
     importFrom("graphics", "abline", "axis", "boxplot", "hist", "lines",
     "locator", "par", "plot", "points", "polygon", "rect",
     "segments", "strheight", "strwidth", "text")
     importFrom("stats", "IQR", "as.dist", "as.formula", "binomial",
     "cancor", "cmdscale", "coef", "cor", "cov", "cutree",
     "density", "dist", "dnorm", "fitted", "glm", "glm.fit",
     "hclust", "lm", "median", "optim", "pchisq", "pf", "pnorm",
     "printCoefmat", "pt", "qqline", "qqnorm", "quantile",
     "rbeta", "rbinom", "resid", "residuals", "rnorm", "runif",
     "sd", "var")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.3-2
Check: R code for possible problems
Result: NOTE
    as.edgelist.sna: no visible global function definition for
     ‘as.matrix.network.edgelist’
    as.edgelist.sna: no visible binding for global variable
     ‘as.matrix.network.edgelist’
    as.edgelist.sna: no visible global function definition for ‘has.loops’
    as.edgelist.sna: no visible global function definition for
     ‘is.directed’
    as.edgelist.sna: no visible global function definition for
     ‘network.size’
    as.edgelist.sna: no visible global function definition for
     ‘network.vertex.names’
    as.edgelist.sna: no visible global function definition for
     ‘is.bipartite’
    as.edgelist.sna: no visible global function definition for
     ‘get.network.attribute’
    as.sociomatrix.sna: no visible global function definition for
     ‘as.sociomatrix’
    gplot3d: no visible global function definition for ‘rgl.clear’
    gplot3d: no visible global function definition for ‘rgl.bbox’
    gplot3d: no visible global function definition for ‘rgl.bg’
    gplot3d: no visible global function definition for ‘rgl.spheres’
    gplot3d: no visible global function definition for ‘rgl.texts’
    gplot3d.arrow: no visible global function definition for
     ‘rgl.triangles’
    gplot3d.loop: no visible global function definition for ‘rgl.triangles’
    gtrans : adjisok: no visible global function definition for
     ‘network.size’
    gtrans : adjisok: no visible global function definition for
     ‘network.edgecount’
    lnam : infomat: no visible global function definition for ‘hessian’
    Undefined global functions or variables:
     as.matrix.network.edgelist as.sociomatrix get.network.attribute
     has.loops hessian is.bipartite is.directed network.edgecount
     network.size network.vertex.names rgl.bbox rgl.bg rgl.clear
     rgl.spheres rgl.texts rgl.triangles
Flavor: r-devel-osx-x86_64-clang

Version: 2.3-2
Check: R code for possible problems
Result: NOTE
    as.edgelist.sna: no visible global function definition for
     ‘as.matrix.network.edgelist’
    as.edgelist.sna: no visible binding for global variable
     ‘as.matrix.network.edgelist’
    as.edgelist.sna: no visible global function definition for ‘has.loops’
    as.edgelist.sna: no visible global function definition for
     ‘is.directed’
    as.edgelist.sna: no visible global function definition for
     ‘network.size’
    as.edgelist.sna: no visible global function definition for
     ‘network.vertex.names’
    as.edgelist.sna: no visible global function definition for
     ‘is.bipartite’
    as.edgelist.sna: no visible global function definition for
     ‘get.network.attribute’
    as.sociomatrix.sna: no visible global function definition for
     ‘as.sociomatrix’
    gplot3d: no visible global function definition for ‘rgl.clear’
    gplot3d: no visible global function definition for ‘rgl.bbox’
    gplot3d: no visible global function definition for ‘rgl.bg’
    gplot3d: no visible global function definition for ‘rgl.spheres’
    gplot3d: no visible global function definition for ‘rgl.texts’
    gplot3d.arrow: no visible global function definition for
     ‘rgl.triangles’
    gplot3d.loop: no visible global function definition for ‘rgl.triangles’
    gtrans : adjisok: no visible global function definition for
     ‘network.size’
    gtrans : adjisok: no visible global function definition for
     ‘network.edgecount’
    lnam : infomat: no visible global function definition for ‘hessian’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64