Represents metagenomic samples on the Euclidean space to examine similarity amongst samples by studying clusters in the model. Given the matrix of metagenomic counts for samples, this package (1) quantifies dissimilarity between samples using Kendall's tau-distance, (2) constructs multidimensional models of different dimension, and (3) plots the models for visualization and comparison.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.0.0) |
| Imports: | gWidgets, RGtk2, gWidgetsRGtk2, MASS, cluster, rgl, GUniFrac, ape |
| Published: | 2014-12-16 |
| Author: | Deepak N. Ayyala, Shili Lin, Department of Statistics, The Ohio State University, Columbus, Ohio, USA. |
| Maintainer: | Deepak Nag Ayyala <ayyala.1 at osu.edu> |
| License: | LGPL-3 |
| NeedsCompilation: | yes |
| CRAN checks: | GrammR results |
| Reference manual: | GrammR.pdf |
| Package source: | GrammR_1.0.1.tar.gz |
| Windows binaries: | r-devel: GrammR_1.0.1.zip, r-release: GrammR_1.0.1.zip, r-oldrel: GrammR_1.0.1.zip |
| OS X Snow Leopard binaries: | r-release: GrammR_1.0.1.tgz, r-oldrel: GrammR_1.0.1.tgz |
| OS X Mavericks binaries: | r-release: GrammR_1.0.1.tgz |
| Old sources: | GrammR archive |