JAGUAR: Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)

Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.

Version: 3.0.0
Depends: R (≥ 3.0.0), Rcpp, plyr, lme4, reshape2
LinkingTo: RcppArmadillo, Rcpp, RcppProgress
Published: 2015-09-24
Author: Chaitanya R. Acharya and Andrew S. Allen
Maintainer: Chaitanya Acharya <c.acharya at duke.edu>
License: GPL-2
URL: https://groups.google.com/d/forum/jaguar-r-package
NeedsCompilation: yes
Materials: README
CRAN checks: JAGUAR results

Downloads:

Reference manual: JAGUAR.pdf
Package source: JAGUAR_3.0.0.tar.gz
Windows binaries: r-devel: JAGUAR_3.0.0.zip, r-release: JAGUAR_3.0.0.zip, r-oldrel: JAGUAR_3.0.0.zip
OS X Snow Leopard binaries: r-release: JAGUAR_2.0.tgz, r-oldrel: JAGUAR_2.0.tgz
OS X Mavericks binaries: r-release: JAGUAR_3.0.0.tgz
Old sources: JAGUAR archive