Offers a set of functions for extending dendrogram objects in R, letting you visualize and compare trees of hierarchical clusterings. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different dendrograms to one another.
| Version: | 1.1.2 |
| Depends: | R (≥ 3.0.0) |
| Imports: | utils, stats, magrittr (≥ 1.0.1), whisker |
| Suggests: | dendextendRcpp (≥ 0.5.0), knitr, testthat, colorspace, ggplot2, plyr, ape, profdpm, microbenchmark, gplots, NMF, d3heatmap, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, circlize (≥ 0.2.5), covr |
| Enhances: | ggdendro, labeltodendro, dendroextras, data.table, rpart |
| Published: | 2015-10-31 |
| Author: | Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Yoav Benjamini [ths] |
| Maintainer: | Tal Galili <tal.galili at gmail.com> |
| BugReports: | https://github.com/talgalili/dendextend/issues |
| License: | GPL-2 | GPL-3 |
| URL: | http://cran.r-project.org/package=dendextend, https://github.com/talgalili/dendextend/, http://www.r-statistics.com/tag/dendextend/, http://bioinformatics.oxfordjournals.org/content/early/2015/08/18/bioinformatics.btv428 |
| NeedsCompilation: | no |
| Citation: | dendextend citation info |
| Materials: | README NEWS ChangeLog |
| In views: | Cluster, Phylogenetics |
| CRAN checks: | dendextend results |
| Reference manual: | dendextend.pdf |
| Vignettes: |
Hierarchical cluster analysis on famous data sets Frequently asked questions A quick introduction to dendextend (start here) Introduction to dendextend |
| Package source: | dendextend_1.1.2.tar.gz |
| Windows binaries: | r-devel: dendextend_1.1.2.zip, r-release: dendextend_1.1.2.zip, r-oldrel: dendextend_1.1.2.zip |
| OS X Snow Leopard binaries: | r-release: dendextend_1.1.0.tgz, r-oldrel: dendextend_0.18.3.tgz |
| OS X Mavericks binaries: | r-release: dendextend_1.1.2.tgz |
| Old sources: | dendextend archive |
| Reverse depends: | dendextendRcpp |
| Reverse imports: | d3heatmap, semiArtificial, stcm |
| Reverse suggests: | circlize |