netassoc: Inference of Species Associations from Co-Occurrence Data

Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.

Version: 0.6.0
Depends: igraph
Imports: rags2ridges, corpcor, huge, vegan
Published: 2015-09-09
Author: Benjamin Blonder, Naia Morueta-Holme
Maintainer: Benjamin Blonder <bblonder at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: netassoc results

Downloads:

Reference manual: netassoc.pdf
Package source: netassoc_0.6.0.tar.gz
Windows binaries: r-devel: netassoc_0.6.0.zip, r-release: netassoc_0.6.0.zip, r-oldrel: netassoc_0.6.0.zip
OS X Snow Leopard binaries: r-release: netassoc_0.6.0.tgz, r-oldrel: netassoc_0.4.3.tgz
OS X Mavericks binaries: r-release: netassoc_0.6.0.tgz
Old sources: netassoc archive