CRAN Package Check Results for Package ldatuning

Last updated on 2015-12-29 00:46:45.

Check Details

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in ‘ldatuning-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: FindTopicsNumber
    > ### Title: FindTopicsNumber
    > ### Aliases: FindTopicsNumber
    >
    > ### ** Examples
    >
    > library(topicmodels)
    > data("AssociatedPress", package="topicmodels")
    > dtm <- AssociatedPress[1:10, ]
    > FindTopicsNumber(dtm, topics = 2:10, metrics = "Arun2010", mc.cores = 1L)
    
     *** caught segfault ***
    address 14, cause 'memory not mapped'
    
    Traceback:
     1: .Call("rGibbslda", as.integer(x$i), as.integer(x$j), as.integer(x$v), as.integer(x$nrow), as.integer(x$ncol), CONTROL_i, switch(control@initialize, beta = 1L, z = 2L, 0L), !is.null(seedwords), seedwords_matrix, as.integer(k), result_dir, if (is.null(model)) NULL else model@beta, if (is.null(model)) NULL else model@z, PACKAGE = "topicmodels")
     2: method(x, k, control, model, mycall, ...)
     3: topicmodels::LDA(dtm, k = x, method = method, control = control)
     4: FUN(X[[i]], ...)
     5: lapply(X = X, FUN = FUN, ...)
     6: parallel::mclapply(topics, mc.cores = mc.cores, FUN = function(x) { topicmodels::LDA(dtm, k = x, method = method, control = control)})
     7: FindTopicsNumber(dtm, topics = 2:10, metrics = "Arun2010", mc.cores = 1L)
    aborting ...
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.1.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     7: FindTopicsNumber(dtm, topics = seq(from = 2, to = 15, by = 1), metrics = c("Griffiths2004", "CaoJuan2009", "Arun2010", "Deveaud2014"), method = "Gibbs", control = list(seed = 77), mc.cores = 1L, verbose = TRUE)
     8: eval(expr, envir, enclos)
     9: eval(expr, envir, enclos)
    10: withVisible(eval(expr, envir, enclos))
    11: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
    12: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
    13: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler)
    14: evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    15: in_dir(opts_knit$get("root.dir") %n% input_dir(), evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    16: block_exec(params)
    17: call_block(x)
    18: process_group.block(group)
    19: process_group(group)
    20: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    21: process_file(text, output)
    22: knit(input, text = text, envir = envir, encoding = encoding, quiet = quiet)
    23: (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", file)) knit2pdf else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv())
    24: vweave(...)
    25: engine$weave(file, quiet = quiet, encoding = enc)
    26: doTryCatch(return(expr), name, parentenv, handler)
    27: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    28: tryCatchList(expr, classes, parentenv, handlers)
    29: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    30: buildVignettes(dir = "/home/ripley/R/packages/tests32/ldatuning.Rcheck/vign_test/ldatuning")
    aborting ...
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86