Last updated on 2015-12-29 00:46:48.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 7.27 | 83.12 | 90.39 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 204.01 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 198.14 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.2.1 | 204.31 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.2.1 | 16.00 | 197.00 | 213.00 | NOTE | |
| r-patched-linux-x86_64 | 1.2.1 | 7.88 | 91.44 | 99.32 | NOTE | |
| r-patched-solaris-sparc | 1.2.1 | 1231.10 | NOTE | |||
| r-patched-solaris-x86 | 1.2.1 | 276.20 | NOTE | |||
| r-release-linux-x86_64 | 1.2.1 | 7.63 | 91.58 | 99.21 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.2.1 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.2.1 | 28.00 | 158.00 | 186.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.2.1 | 46.00 | 219.00 | 265.00 | NOTE |
Version: 1.2.1
Check: R code for possible problems
Result: NOTE
XH: no visible binding for global variable ‘exprs’
XIs: no visible binding for global variable ‘exprs’
cv.aep: no visible global function definition for ‘mclapply’
cv.frsvm: no visible global function definition for ‘mclapply’
cv.hubc: no visible global function definition for ‘quantile’
cv.hubc: no visible global function definition for ‘mclapply’
cv.pac: no visible global function definition for ‘mclapply’
cv.stsvm: no visible global function definition for ‘mclapply’
getGeneRanking: no visible global function definition for ‘t.test’
getGraphRank: no visible global function definition for ‘t.test’
predictPac: no visible global function definition for ‘predict’
probeset2pathway: no visible binding for global variable
‘KEGGEXTID2PATHID’
probeset2pathwayTrain: no visible binding for global variable
‘KEGGEXTID2PATHID’
probeset2pathwayTrain: no visible global function definition for
‘t.test’
probeset2pathwayTrain: no visible global function definition for
‘quantile’
spanbound: no visible global function definition for ‘coef’
spanbound: no visible global function definition for ‘predict’
spanbound: no visible global function definition for ‘param’
spanbound: no visible global function definition for ‘error’
spanbound: no visible global function definition for ‘kernelf’
spanbound: no visible global function definition for ‘b’
svm.fit: no visible global function definition for ‘coef’
svm.predict: no visible global function definition for ‘coef’
svm.predict: no visible global function definition for ‘b’
train.pac: no visible global function definition for ‘glm’
train.stsvm: no visible global function definition for ‘quantile’
train.stsvm: no visible global function definition for ‘head’
Undefined global functions or variables:
KEGGEXTID2PATHID b coef error exprs glm head kernelf mclapply param
predict quantile t.test
Consider adding
importFrom("stats", "coef", "glm", "predict", "quantile", "t.test")
importFrom("utils", "head")
to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64
Version: 1.2.1
Check: R code for possible problems
Result: NOTE
XH: no visible binding for global variable ‘exprs’
XIs: no visible binding for global variable ‘exprs’
cv.aep: no visible global function definition for ‘mclapply’
cv.frsvm: no visible global function definition for ‘mclapply’
cv.hubc: no visible global function definition for ‘mclapply’
cv.pac: no visible global function definition for ‘mclapply’
cv.stsvm: no visible global function definition for ‘mclapply’
probeset2pathway: no visible binding for global variable
‘KEGGEXTID2PATHID’
probeset2pathwayTrain: no visible binding for global variable
‘KEGGEXTID2PATHID’
spanbound: no visible global function definition for ‘param’
spanbound: no visible global function definition for ‘error’
spanbound: no visible global function definition for ‘kernelf’
spanbound: no visible global function definition for ‘b’
svm.predict: no visible global function definition for ‘b’
Undefined global functions or variables:
KEGGEXTID2PATHID b error exprs kernelf mclapply param
Flavor: r-devel-osx-x86_64-clang
Version: 1.2.1
Check: R code for possible problems
Result: NOTE
XH: no visible binding for global variable ‘exprs’
XIs: no visible binding for global variable ‘exprs’
cv.aep: no visible global function definition for ‘mclapply’
cv.frsvm: no visible global function definition for ‘mclapply’
cv.hubc: no visible global function definition for ‘mclapply’
cv.pac: no visible global function definition for ‘mclapply’
cv.stsvm: no visible global function definition for ‘mclapply’
probeset2pathway: no visible binding for global variable
‘KEGGEXTID2PATHID’
probeset2pathwayTrain: no visible binding for global variable
‘KEGGEXTID2PATHID’
spanbound: no visible global function definition for ‘param’
spanbound: no visible global function definition for ‘error’
spanbound: no visible global function definition for ‘kernelf’
spanbound: no visible global function definition for ‘b’
svm.predict: no visible global function definition for ‘b’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.2.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘KEGG.db’
Flavor: r-release-osx-x86_64-mavericks
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘netClass-Ex.R’ failed
The error most likely occurred in:
> ### Name: cv.aep
> ### Title: Cross validation for aepSVM (aepSVM)
> ### Aliases: cv.aep
> ### Keywords: aep
>
> ### ** Examples
>
> library(netClass)
> data(expr)
> data(ad.matrix)
> x <- expr$genes
> y <- expr$y
>
> library(KEGG.db)
Error in library(KEGG.db) : there is no package called ‘KEGG.db’
Execution halted
Flavor: r-release-osx-x86_64-mavericks