Last updated on 2015-12-29 00:47:00.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-gcc | 3.1-3 | 3.59 | 41.30 | 44.90 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 3.1-3 | 90.87 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 3.1-3 | 84.18 | NOTE | |||
| r-devel-osx-x86_64-clang | 3.1-3 | 116.68 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 3.1-3 | 17.00 | 149.00 | 166.00 | NOTE | |
| r-patched-linux-x86_64 | 3.1-3 | 3.91 | 43.97 | 47.88 | NOTE | |
| r-patched-solaris-sparc | 3.1-3 | 588.00 | NOTE | |||
| r-patched-solaris-x86 | 3.1-3 | 112.00 | NOTE | |||
| r-release-linux-x86_64 | 3.1-3 | 3.61 | 42.77 | 46.38 | NOTE | |
| r-release-osx-x86_64-mavericks | 3.1-3 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 3.1-3 | 24.00 | 119.00 | 143.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 3.1-3 | 27.00 | 122.00 | 149.00 | NOTE |
Version: 3.1-3
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to ‘segmented’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.1-3
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
as.matrix.alignment getAnnot.SeqAcnucWeb getAnnot.SeqFastaAA
getAnnot.SeqFastadna getAnnot.default getAnnot.list getAnnot.logical
getAnnot.qaw getFrag.SeqAcnucWeb getFrag.SeqFastaAA
getFrag.SeqFastadna getFrag.SeqFrag getFrag.character getFrag.default
getFrag.list getFrag.logical getFrag.qaw getKeyword.SeqAcnucWeb
getKeyword.default getKeyword.list getKeyword.logical getKeyword.qaw
getLength.SeqAcnucWeb getLength.SeqFastaAA getLength.SeqFastadna
getLength.SeqFrag getLength.character getLength.default
getLength.list getLength.logical getLength.qaw
getLocation.SeqAcnucWeb getLocation.default getLocation.list
getLocation.logical getLocation.qaw getName.SeqAcnucWeb
getName.SeqFastaAA getName.SeqFastadna getName.SeqFrag
getName.default getName.list getName.logical getName.qaw
getSequence.SeqAcnucWeb getSequence.SeqFastaAA
getSequence.SeqFastadna getSequence.SeqFrag getSequence.character
getSequence.default getSequence.list getSequence.logical
getSequence.qaw getTrans.SeqAcnucWeb getTrans.SeqFastadna
getTrans.SeqFrag getTrans.character getTrans.default getTrans.list
getTrans.logical getTrans.qaw plot.SeqAcnucWeb print.SeqAcnucWeb
print.qaw summary.SeqFastaAA summary.SeqFastadna
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64
Version: 3.1-3
Check: R code for possible problems
Result: NOTE
AAstat: no visible global function definition for ‘rainbow’
AAstat: no visible global function definition for ‘title’
AAstat: no visible global function definition for ‘axis’
AAstat : <anonymous>: no visible global function definition for
‘segments’
AAstat : <anonymous>: no visible global function definition for ‘rect’
AAstat: no visible global function definition for ‘rect’
baselineabif: no visible global function definition for ‘density’
circle: no visible global function definition for ‘polygon’
clientid: no visible global function definition for
‘packageDescription’
col2alpha: no visible global function definition for ‘col2rgb’
col2alpha: no visible global function definition for ‘rgb’
computePI: no visible global function definition for ‘nlm’
computePI: no visible global function definition for ‘runif’
dia.bactgensize: no visible global function definition for ‘read.table’
dia.bactgensize: no visible global function definition for
‘complete.cases’
dia.bactgensize: no visible global function definition for ‘hist’
dia.bactgensize: no visible global function definition for ‘density’
dia.bactgensize: no visible global function definition for ‘lines’
dia.bactgensize: no visible global function definition for ‘legend’
dia.bactgensize: no visible global function definition for ‘mtext’
dia.bactgensize : logvraineg: no visible global function definition for
‘dnorm’
dia.bactgensize: no visible global function definition for ‘nlm’
dia.bactgensize: no visible global function definition for ‘dnorm’
dia.bactgensize: no visible global function definition for ‘text’
dia.db.growth: no visible global function definition for ‘par’
dia.db.growth: no visible global function definition for ‘plot’
dia.db.growth: no visible global function definition for ‘abline’
dia.db.growth: no visible global function definition for ‘lm’
dia.db.growth: no visible global function definition for ‘legend’
dist.alignment: no visible global function definition for ‘as.dist’
dotPlot: no visible global function definition for ‘image’
dotPlot: no visible global function definition for ‘box’
dotchart.uco: no visible global function definition for ‘par’
dotchart.uco: no visible global function definition for ‘dotchart’
draw.oriloc: no visible global function definition for ‘plot’
draw.oriloc: no visible global function definition for ‘axis’
draw.oriloc: no visible global function definition for ‘abline’
draw.oriloc: no visible global function definition for ‘lines’
draw.oriloc: no visible global function definition for ‘mtext’
draw.rearranged.oriloc: no visible global function definition for
‘plot’
draw.rearranged.oriloc: no visible global function definition for
‘abline’
draw.rearranged.oriloc: no visible global function definition for
‘axis’
draw.rearranged.oriloc: no visible global function definition for
‘lines’
draw.rearranged.oriloc: no visible global function definition for
‘mtext’
draw.rearranged.oriloc: no visible global function definition for
‘segments’
draw.recstat: no visible global function definition for ‘par’
draw.recstat: no visible global function definition for ‘plot’
draw.recstat: no visible global function definition for ‘lines’
draw.recstat: no visible global function definition for ‘legend’
draw.recstat: no visible global function definition for ‘points’
draw.recstat: no visible global function definition for ‘abline’
draw.recstat: no visible global function definition for ‘text’
extract.breakpoints: no visible global function definition for ‘runif’
extract.breakpoints: no visible global function definition for ‘lm’
kaks: no visible global function definition for ‘str’
kaks : mkresult: no visible global function definition for ‘as.dist’
oriloc: no visible global function definition for ‘download.file’
oriloc: no visible global function definition for ‘cor’
peakabif: no visible global function definition for ‘par’
peakabif: no visible global function definition for ‘splinefun’
peakabif: no visible global function definition for ‘optimize’
peakabif: no visible global function definition for ‘integrate’
peakabif: no visible global function definition for ‘plot’
peakabif: no visible global function definition for ‘abline’
peakabif: no visible global function definition for ‘lines’
peakabif: no visible global function definition for ‘mtext’
permutation: no visible global function definition for ‘tail’
plot.SeqAcnucWeb: no visible global function definition for ‘par’
plot.SeqAcnucWeb: no visible global function definition for ‘plot’
plot.SeqAcnucWeb: no visible global function definition for ‘axis’
plot.SeqAcnucWeb: no visible global function definition for ‘title’
plot.SeqAcnucWeb: no visible global function definition for ‘rect’
plot.SeqAcnucWeb: no visible global function definition for ‘legend’
plotPanels: no visible global function definition for ‘plot.new’
plotPanels: no visible global function definition for ‘plot.window’
plotPanels: no visible global function definition for ‘rect’
plotPanels: no visible global function definition for ‘text’
plotPanels: no visible global function definition for ‘title’
plotPanels: no visible global function definition for ‘axis’
plotabif: no visible global function definition for ‘par’
plotabif: no visible global function definition for ‘plot’
plotabif: no visible global function definition for ‘axis’
plotabif: no visible global function definition for ‘grey’
plotabif: no visible global function definition for ‘data’
plotabif: no visible global function definition for ‘abline’
plotabif: no visible global function definition for ‘text’
plotladder: no visible global function definition for ‘par’
plotladder: no visible global function definition for ‘data’
plotladder: no visible global function definition for ‘plot’
plotladder: no visible global function definition for ‘text’
plotladder: no visible global function definition for ‘rect’
readBins: no visible global function definition for ‘read.table’
readPanels: no visible global function definition for ‘read.table’
stutterabif : ytheo.one: no visible global function definition for
‘dnorm’
stutterabif: no visible global function definition for ‘nlm’
stutterabif : ytheo.two: no visible global function definition for
‘dnorm’
stutterabif: no visible global function definition for ‘splinefun’
stutterabif: no visible global function definition for ‘optimize’
stutterabif: no visible global function definition for ‘integrate’
stutterabif: no visible global function definition for ‘plot’
stutterabif: no visible global function definition for ‘abline’
stutterabif: no visible global function definition for ‘lines’
stutterabif: no visible global function definition for ‘legend’
tablecode: no visible global function definition for ‘par’
tablecode: no visible global function definition for ‘plot.new’
tablecode: no visible global function definition for ‘plot.window’
tablecode: no visible global function definition for ‘segments’
tablecode: no visible global function definition for ‘text’
test.co.recstat: no visible global function definition for
‘kruskal.test’
test.li.recstat : table.recstat: no visible global function definition
for ‘t.test’
Undefined global functions or variables:
abline as.dist axis box col2rgb complete.cases cor data density dnorm
dotchart download.file grey hist image integrate kruskal.test legend
lines lm mtext nlm optimize packageDescription par plot plot.new
plot.window points polygon rainbow read.table rect rgb runif segments
splinefun str t.test tail text title
Consider adding
importFrom("grDevices", "col2rgb", "grey", "rainbow", "rgb")
importFrom("graphics", "abline", "axis", "box", "dotchart", "hist",
"image", "legend", "lines", "mtext", "par", "plot",
"plot.new", "plot.window", "points", "polygon", "rect",
"segments", "text", "title")
importFrom("stats", "as.dist", "complete.cases", "cor", "density",
"dnorm", "integrate", "kruskal.test", "lm", "nlm",
"optimize", "runif", "splinefun", "t.test")
importFrom("utils", "data", "download.file", "packageDescription",
"read.table", "str", "tail")
to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64