Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data. Available functions allow ancestral state reconstruction, missing data imputation, phylogenetic regression (phylogenetic generalized least squares), and phylogenetic principal components analysis (pPCA).
| Version: | 0.1.1 |
| Depends: | ape |
| Imports: | Rcpp, doBy, geiger, phylolm, phytools, mvnmle |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2015-06-02 |
| Author: | Eric W. Goolsby, Jorn Bruggeman, Cecile Ane |
| Maintainer: | Eric W. Goolsby <eric.goolsby.evolution at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | Rphylopars results |
| Reference manual: | Rphylopars.pdf |
| Package source: | Rphylopars_0.1.1.tar.gz |
| Windows binaries: | r-devel: Rphylopars_0.1.1.zip, r-release: Rphylopars_0.1.1.zip, r-oldrel: Rphylopars_0.1.1.zip |
| OS X Snow Leopard binaries: | r-release: Rphylopars_0.1.1.tgz, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: Rphylopars_0.1.1.tgz |
| Old sources: | Rphylopars archive |