biogram: N-Gram Analysis of Biological Sequences

Tools for extraction and analysis of various n-grams (k-mers) derived from biological sequences (proteins or nucleic acids). Uses QuiPT (quick permutation test) for fast feature-filtering to deal with the dimensionality of the n-gram data.

Version: 1.2
Depends: R (≥ 3.0.0), slam
Imports: bit, entropy
Suggests: ggplot2, testthat
Published: 2015-06-22
Author: Michal Burdukiewicz [cre, aut], Piotr Sobczyk [aut], Chris Lauber [aut]
Maintainer: Michal Burdukiewicz <michalburdukiewicz at gmail.com>
BugReports: https://github.com/michbur/biogram/issues
License: GPL-3
URL: https://github.com/michbur/biogram
NeedsCompilation: no
Citation: biogram citation info
Materials: README ChangeLog
CRAN checks: biogram results

Downloads:

Reference manual: biogram.pdf
Package source: biogram_1.2.tar.gz
Windows binaries: r-devel: biogram_1.2.zip, r-release: biogram_1.2.zip, r-oldrel: biogram_1.2.zip
OS X Snow Leopard binaries: r-release: biogram_1.2.tgz, r-oldrel: biogram_1.1.tgz
OS X Mavericks binaries: r-release: biogram_1.2.tgz
Old sources: biogram archive

Reverse dependencies:

Reverse imports: signalHsmm