coalescentMCMC: MCMC Algorithms for the Coalescent

Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters.

Version: 0.4-1
Depends: ape, coda, lattice
Imports: Matrix, phangorn, stats
Published: 2015-03-03
Author: Emmanuel Paradis [aut, cre, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: NEWS
In views: Bayesian
CRAN checks: coalescentMCMC results


Reference manual: coalescentMCMC.pdf
Vignettes: Coalescent Models
Runnning coalescentMCMC
Package source: coalescentMCMC_0.4-1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: coalescentMCMC_0.4-1.tgz, r-oldrel: coalescentMCMC_0.4-1.tgz
OS X Mavericks binaries: r-release: coalescentMCMC_0.4-1.tgz
Old sources: coalescentMCMC archive