Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.
| Version: | 1.17 |
| Depends: | ape, nloptr, GenSA |
| Imports: | expm, numDeriv, corpcor, phangorn, parallel |
| Published: | 2015-10-30 |
| Author: | Jeremy M. Beaulieu, Jeffrey C. Oliver, Brian O'Meara |
| Maintainer: | Jeremy Beaulieu <jbeaulieu at nimbios.org> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| In views: | Phylogenetics |
| CRAN checks: | corHMM results |
| Reference manual: | corHMM.pdf |
| Package source: | corHMM_1.17.tar.gz |
| Windows binaries: | r-devel: corHMM_1.17.zip, r-release: corHMM_1.17.zip, r-oldrel: corHMM_1.17.zip |
| OS X Snow Leopard binaries: | r-release: corHMM_1.17.tgz, r-oldrel: corHMM_1.16.tgz |
| OS X Mavericks binaries: | r-release: corHMM_1.17.tgz |
| Old sources: | corHMM archive |