Contains a number of comparative phylogenetic methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of 'BiSSE' (Binary State
Speciation and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State Speciation and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
speciation and extinction.
| Version: |
0.9-8 |
| Depends: |
R (≥ 2.10), methods, ape |
| Imports: |
deSolve (≥ 1.7), graphics, grDevices, stats, subplex, Rcpp (≥ 0.10.0) |
| LinkingTo: |
Rcpp |
| Suggests: |
numDeriv, minqa, lubridate, expm, caper, geiger |
| Published: |
2015-12-21 |
| Author: |
Richard G. FitzJohn, with 'GeoSSE' and
'ClaSSE' by Emma E. Goldberg, and 'BiSSE-ness' by Karen
Magnuson-Ford. |
| Maintainer: |
Richard G. FitzJohn <rich.fitzjohn at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
http://www.zoology.ubc.ca/prog/diversitree |
| NeedsCompilation: |
yes |
| SystemRequirements: |
fftw3 (>= 3.1.2), gsl (>= 1.15) |
| Citation: |
diversitree citation info |
| Materials: |
README ChangeLog |
| In views: |
Phylogenetics |
| CRAN checks: |
diversitree results |