seqinr: Biological Sequences Retrieval and Analysis

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Includes also utilities for sequence data management under the ACNUC system.

Version: 3.1-3
Depends: ade4, R (≥ 2.10.0)
Suggests: segmented
Published: 2014-12-17
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and Leonor Palmeira and Simon Penel and Guy Perriere
Maintainer: Simon Penel <simon.penel at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:, Mailing list:
NeedsCompilation: yes
SystemRequirements: zlib headers and library.
Citation: seqinr citation info
In views: Genetics, WebTechnologies
CRAN checks: seqinr results


Reference manual: seqinr.pdf
Package source: seqinr_3.1-3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: seqinr_3.1-3.tgz, r-oldrel: seqinr_3.1-3.tgz
OS X Mavericks binaries: r-release: seqinr_3.1-3.tgz
Old sources: seqinr archive

Reverse dependencies:

Reverse depends: CNOGpro, MEET, mlgt, rPlant
Reverse imports: adegenet, aLFQ, apmsWAPP, caRpools, evobiR, gkmSVM, gquad, megaptera, prozor, signalHsmm, sivipm
Reverse suggests: cubfits, phangorn, rnaseqWrapper, SimRAD, TKF
Reverse enhances: spgs