CRAN Package Check Results for Package SpaDES

Last updated on 2016-03-07 23:47:39.

Check Details

Version: 1.1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘fastshp’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1.1
Flags: --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘fastshp’
Flavor: r-patched-solaris-sparc

Version: 1.1.1
Check: tests
Result: ERROR
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     53: test_code(desc, substitute(code), env = parent.frame())
     54: test_that("test checkpointing", { tmpdir <- file.path(tempdir(), "test_checkpoint") file <- file.path("chkpnt.RData") on.exit(unlink(tmpdir, recursive = TRUE)) set.seed(1234) times <- list(start = 0, end = 2, timeunit = "second") parameters <- list(.globals = list(stackName = "landscape"), .checkpoint = list(interval = 1, file = file), randomLandscapes = list(.plotInitialTime = NA), caribouMovement = list(.plotInitialTime = NA, torus = TRUE)) modules <- list("randomLandscapes", "caribouMovement") paths <- list(modulePath = system.file("sampleModules", package = "SpaDES"), outputPath = tmpdir) simA <- simInit(times = times, params = parameters, modules = modules, paths = paths) simA <- suppressWarnings(spades(simA)) set.seed(1234) times <- list(start = 0, end = 1, timeunit = "second") simB <- simInit(times = times, params = parameters, modules = modules, paths = paths) simB <- suppressWarnings(spades(simB)) rm(simB) checkpointLoad(file = file.path(paths$outputPath, file)) end(simB) <- 2 simB <- spades(simB) expect_true(all.equal(as(simA, "simList_"), as(simB, "simList_")))})
     55: eval(expr, envir, enclos)
     56: eval(exprs, envir)
     57: sys.source2(fname, new.env(parent = env))
     58: FUN(X[[i]], ...)
     59: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE)
     60: test_files(paths, reporter = reporter, env = env, ...)
     61: test_dir(test_path, reporter = reporter, env = env, filter = filter, ...)
     62: with_top_env(env, { test_dir(test_path, reporter = reporter, env = env, filter = filter, ...)})
     63: run_tests(package, test_path, filter, reporter, ...)
     64: test_check("SpaDES")
     aborting ...
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    45: simInit(times = list(start = 0, end = 2, timeunit = "year"), params = parameters, modules = list("randomLandscapes", "fireSpread", "caribouMovement"), objects = list(), paths = list(modulePath = system.file("sampleModules", package = "SpaDES"))) %>% spades()
    46: eval(expr, envir, enclos)
    47: eval(expr, envir, enclos)
    48: withVisible(eval(expr, envir, enclos))
    49: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
    50: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
    51: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler)
    52: evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    53: in_dir(opts_knit$get("root.dir") %n% input_dir(), evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    54: block_exec(params)
    55: call_block(x)
    56: process_group.block(group)
    57: process_group(group)
    58: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    59: process_file(text, output)
    60: knit(input, text = text, envir = envir, encoding = encoding, quiet = quiet)
    61: (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", file)) knit2pdf else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv())
    62: vweave(...)
    63: engine$weave(file, quiet = quiet, encoding = enc)
    64: doTryCatch(return(expr), name, parentenv, handler)
    65: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    66: tryCatchList(expr, classes, parentenv, handlers)
    67: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    68: buildVignettes(dir = "/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.2/SpaDES.Rcheck/vign_test/SpaDES")
    aborting ...
Flavor: r-release-osx-x86_64-mavericks