CRAN Package Check Results for Package fdaPDE

Last updated on 2016-03-07 23:47:22.

Memtest notes: clang-UBSAN gcc6-UBSAN gcc-UBSAN

Check Details

Version: 0.1-1
Check: installed package size
Result: NOTE
     installed size is 27.1Mb
     sub-directories of 1Mb or more:
     libs 26.8Mb
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 0.1-1
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'fdaPDE-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: smooth.FEM.PDE.basis
    > ### Title: Spatial regression with differential regularization: anysotropic
    > ### case (elliptic PDE)
    > ### Aliases: smooth.FEM.PDE.basis
    >
    > ### ** Examples
    >
    > # Load the mesh and plot it
    > data(mesh.2D.simple)
    > plot(mesh.2D.simple)
    > # Create a vector of noisy samples of an underlying spatial field,
    > # located over the nodes of the mesh
    > observations = sin(pi*mesh.2D.simple$nodes[,1]) + rnorm(n = nrow(mesh.2D.simple$nodes), sd = 0.1)
    > # Create the FEM basis object
    > FEMbasis = create.FEM.basis(mesh.2D.simple, 2)
    >
    > # Set a vector of smoothing coefficients
    > lambda = c(10^-4, 1, 10^4)
    >
    > # Set the anysotropic smoothing matrix K
    > PDE_parameters_anys = list(K = matrix(c(0.01,0,0,1), nrow = 2), b = c(0,0), c = 0)
    > # Estimate one field for each smoothing parameter and plot these
    > FEM_CPP_PDE = smooth.FEM.PDE.basis(observations = observations,
    + FEMbasis = FEMbasis, lambda = lambda,
    + PDE_parameters = PDE_parameters_anys)
    [1] "C++ Code Execution"
    > plot(FEM_CPP_PDE$fit.FEM)
    Press a button for the next plot...
    Press a button for the next plot...
    Press a button for the next plot...
    >
    > # Evaluate solution in three points
    > eval.FEM(FEM_CPP_PDE$fit.FEM, locations = rbind(c(0,0),c(0.5,0),c(-2,-2)))
    
    This application has requested the Runtime to terminate it in an unusual way.
    Please contact the application's support team for more information.
    Assertion failed!
    
    Program: D:\RCompile\recent\R\bin\i386\Rterm.exe
    File: d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include/Eigen/src/Core/DenseStorage.h, Line 86
    
    Expression: (reinterpret_cast<size_t>(array) & 0xf) == 0 && "this assertion is explained here: " "http://eigen.tuxfamily.org/dox-devel/group__TopicUnalignedArrayAssert.html" " **** READ THIS WEB PAGE !!! ****"
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1-1
Check: examples
Result: ERROR
    Running examples in ‘fdaPDE-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: smooth.FEM.PDE.basis
    > ### Title: Spatial regression with differential regularization: anysotropic
    > ### case (elliptic PDE)
    > ### Aliases: smooth.FEM.PDE.basis
    >
    > ### ** Examples
    >
    > # Load the mesh and plot it
    > data(mesh.2D.simple)
    > plot(mesh.2D.simple)
    > # Create a vector of noisy samples of an underlying spatial field,
    > # located over the nodes of the mesh
    > observations = sin(pi*mesh.2D.simple$nodes[,1]) + rnorm(n = nrow(mesh.2D.simple$nodes), sd = 0.1)
    > # Create the FEM basis object
    > FEMbasis = create.FEM.basis(mesh.2D.simple, 2)
    >
    > # Set a vector of smoothing coefficients
    > lambda = c(10^-4, 1, 10^4)
    >
    > # Set the anysotropic smoothing matrix K
    > PDE_parameters_anys = list(K = matrix(c(0.01,0,0,1), nrow = 2), b = c(0,0), c = 0)
    > # Estimate one field for each smoothing parameter and plot these
    > FEM_CPP_PDE = smooth.FEM.PDE.basis(observations = observations,
    + FEMbasis = FEMbasis, lambda = lambda,
    + PDE_parameters = PDE_parameters_anys)
    [1] "C++ Code Execution"
    > plot(FEM_CPP_PDE$fit.FEM)
    Press a button for the next plot...
    Press a button for the next plot...
    Press a button for the next plot...
    >
    > # Evaluate solution in three points
    > eval.FEM(FEM_CPP_PDE$fit.FEM, locations = rbind(c(0,0),c(0.5,0),c(-2,-2)))
    
     *** caught segfault ***
    address fc637cbf, cause 'memory not mapped'
    
    Traceback:
     1: .Call("eval_FEM_fd", FEMbasis$mesh, locations[, 1], locations[, 2], coeff[, i], FEMbasis$order, redundant, package = "fdaPDE")
     2: CPP_eval.FEM(FEM, locations, TRUE)
     3: eval.FEM(FEM_CPP_PDE$fit.FEM, locations = rbind(c(0, 0), c(0.5, 0), c(-2, -2)))
    aborting ...
Flavor: r-patched-solaris-x86