MDplot: Visualizing Molecular Dynamics Analyses

Provides automatization for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis.

Version: 0.3
Depends: R (≥ 3.0.0), methods, MASS, RColorBrewer, gplots, gtools
Published: 2016-02-18
Author: Christian Margreitter [aut, cre]
Maintainer: Christian Margreitter <christian.margreitter at>
License: GPL-3
NeedsCompilation: no
Citation: MDplot citation info
Materials: NEWS
CRAN checks: MDplot results


Reference manual: MDplot.pdf
Package source: MDplot_0.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: MDplot_0.3.tgz, r-oldrel: not available
OS X Mavericks binaries: r-release: MDplot_0.3.tgz
Old sources: MDplot archive