Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
| Version: |
0.61.0 |
| Depends: |
R (≥ 3.1.2), utils |
| Imports: |
R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.19.0), R.utils (≥ 2.2.0), R.cache (≥ 0.12.0), matrixStats (≥ 0.50.1), DNAcopy (≥
1.40.0), listenv (≥ 0.6.0), future (≥ 0.11.0), parallel |
| Suggests: |
Hmisc (≥ 3.16-0), R.rsp (≥ 0.21.0), R.devices (≥ 2.13.2), ggplot2 (≥ 1.0.1), aroma.light (≥ 2.2.1) |
| Published: |
2016-02-04 |
| Author: |
Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut] |
| Maintainer: |
Henrik Bengtsson <henrikb at braju.com> |
| BugReports: |
https://github.com/HenrikBengtsson/PSCBS/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/HenrikBengtsson/PSCBS |
| NeedsCompilation: |
no |
| Citation: |
PSCBS citation info |
| Materials: |
NEWS |
| CRAN checks: |
PSCBS results |