Rphylopars: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation

Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data. Available functions allow ancestral state reconstruction, missing data imputation, phylogenetic regression (phylogenetic generalized least squares), and phylogenetic principal components analysis (pPCA).

Version: 0.1.1
Depends: ape
Imports: Rcpp, doBy, geiger, phylolm, phytools, mvnmle
LinkingTo: Rcpp, RcppArmadillo
Published: 2015-06-02
Author: Eric W. Goolsby, Jorn Bruggeman, Cecile Ane
Maintainer: Eric W. Goolsby <eric.goolsby.evolution at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: Rphylopars results

Downloads:

Reference manual: Rphylopars.pdf
Package source: Rphylopars_0.1.1.tar.gz
Windows binaries: r-devel: Rphylopars_0.1.1.zip, r-release: Rphylopars_0.1.1.zip, r-oldrel: Rphylopars_0.1.1.zip
OS X Snow Leopard binaries: r-release: Rphylopars_0.1.1.tgz, r-oldrel: not available
OS X Mavericks binaries: r-release: Rphylopars_0.1.1.tgz
Old sources: Rphylopars archive