Provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
| Version: | 0.9.3 |
| Depends: | R (≥ 1.8.0) |
| Suggests: | RMySQL, DBI, AnnotationDbi |
| Published: | 2015-09-08 |
| Author: | Ulrich Wittelsbuerger [aut, cre], Heng Li [ctb], Bob Handsaker [ctb] |
| Maintainer: | Ulrich Wittelsbuerger <ulrich.wittelsbuerger at uni-duesseldorf.de> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | inst/COPYRIGHTS WhopGenome copyright details |
| NeedsCompilation: | yes |
| SystemRequirements: | zlib headers and library |
| Citation: | WhopGenome citation info |
| CRAN checks: | WhopGenome results |
| Reference manual: | WhopGenome.pdf |
| Package source: | WhopGenome_0.9.3.tar.gz |
| Windows binaries: | r-devel: WhopGenome_0.9.3.zip, r-release: WhopGenome_0.9.3.zip, r-oldrel: WhopGenome_0.9.3.zip |
| OS X Snow Leopard binaries: | r-release: WhopGenome_0.9.3.tgz, r-oldrel: WhopGenome_0.9.2.tgz |
| OS X Mavericks binaries: | r-release: WhopGenome_0.9.3.tgz |
| Old sources: | WhopGenome archive |
| Reverse depends: | gaston |
| Reverse suggests: | PopGenome |