diveRsity: A Comprehensive, General Purpose Population Genetics Analysis Package

Allows the calculation of both genetic diversity partition statistics, genetic differentiation statistics, and locus informativeness for ancestry assignment. It also provides users with various option to calculate bootstrapped 95\% confidence intervals both across loci, for pairwise population comparisons, and to plot these results interactively. Parallel computing capabilities and pairwise results without bootstrapping are provided. Weir and Cockerham's 1984 F-statistics are also calculated. Various plotting features are also provided, as well as Chi-square tests of genetic heterogeneity are also provided. Functionality for the calculation of various diversity parameters is possible for RAD-seq derived SNP data sets containing thousands of marker loci. A shiny application for the development of microsatellite multiplexes is also available.

Version: 1.9.89
Depends: R (≥ 3.0.0)
Imports: ggplot2, shiny, qgraph, Rcpp, methods, stats, grid
LinkingTo: Rcpp
Suggests: xlsx, sendplot, plotrix, parallel, HWxtest
Published: 2015-11-22
Author: Kevin Keenan
Maintainer: Kevin Keenan <kkeenan02 at qub.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://diversityinlife.weebly.com/
NeedsCompilation: yes
Citation: diveRsity citation info
CRAN checks: diveRsity results


Reference manual: diveRsity.pdf
Vignettes: diveRsity
Package source: diveRsity_1.9.89.tar.gz
Windows binaries: r-devel: diveRsity_1.9.89.zip, r-release: diveRsity_1.9.89.zip, r-oldrel: diveRsity_1.9.89.zip
OS X Snow Leopard binaries: r-release: diveRsity_1.9.89.tgz, r-oldrel: diveRsity_1.9.73.tgz
OS X Mavericks binaries: r-release: diveRsity_1.9.89.tgz
Old sources: diveRsity archive