Functions for fitting various models to capture-recapture data
including fixed and mixed-effects Cormack-Jolly-Seber(CJS) for survival
estimation and POPAN structured Jolly-Seber models for abundance
estimation. Includes a CJS models that concurrently estimates and corrects
for tag loss. Hidden Markov model (HMM) implementations of CJS and
multistate models with and without state uncertainty.
| Version: |
1.1.11 |
| Depends: |
R (≥ 2.15.0), lme4, methods, parallel |
| Imports: |
graphics, stats, utils, R2admb, truncnorm, coda, Matrix, numDeriv, expm, Rcpp (≥ 0.9.13), optimx (≥ 2013.8.6) |
| LinkingTo: |
Rcpp |
| Suggests: |
ggplot2 |
| Published: |
2016-03-07 |
| Author: |
Jeff Laake, Devin Johnson, Paul Conn |
| Maintainer: |
Jeff Laake <Jeff.Laake at noaa.gov> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| SystemRequirements: |
ADMB version 11 (http://admb-project.org/) for
use.admb=TRUE; see readme.txt |
| Citation: |
marked citation info |
| Materials: |
NEWS |
| In views: |
Environmetrics |
| CRAN checks: |
marked results |