Phylogenetic analysis in R: Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.
| Version: | 2.0.2 |
| Depends: | R (≥ 3.0.0), ape (≥ 3.4) |
| Imports: | quadprog, igraph (≥ 1.0), Matrix, parallel, nnls, methods, utils, stats, graphics, grDevices |
| Suggests: | testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr, rmarkdown, Biostrings |
| Published: | 2016-01-23 |
| Author: | Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Alastair Potts [aut] |
| Maintainer: | Klaus Schliep <klaus.schliep at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/KlausVigo/phangorn |
| NeedsCompilation: | yes |
| Citation: | phangorn citation info |
| Materials: | README NEWS |
| In views: | Genetics, Phylogenetics |
| CRAN checks: | phangorn results |
| Reference manual: | phangorn.pdf |
| Vignettes: |
Ancestral Sequence Reconstruction Constructing phylogenetic trees Advanced features Splits and Networx |
| Package source: | phangorn_2.0.2.tar.gz |
| Windows binaries: | r-devel: phangorn_2.0.2.zip, r-release: phangorn_2.0.2.zip, r-oldrel: phangorn_2.0.2.zip |
| OS X Snow Leopard binaries: | r-release: phangorn_2.0.2.tgz, r-oldrel: phangorn_1.99-7.tgz |
| OS X Mavericks binaries: | r-release: phangorn_2.0.2.tgz |
| Old sources: | phangorn archive |
| Reverse depends: | apex, MonoPhy |
| Reverse imports: | coalescentMCMC, CommT, corHMM, markophylo, OUwie, paleotree, phytools, poppr, RADami, RAM, recluster, SeqFeatR, timetree, TKF, treescape |