rase: Range Ancestral State Estimation for Phylogeography and
Comparative Analyses
The rase package primarily implements the Range Ancestral State Estimation for phylogeography described in Quintero, I., Keil, P., Jetz, W., & Crawford, F. W. (2015). Historical Biogeography Using Species Geographical Ranges. Systematic biology, 64(6), 1059-1073. It also includes Bayesian inference of ancestral states under a Brownian Motion model of character evolution and Maximum Likelihood estimation of rase for n-dimensional data. Visualizing functions in 3D are implemented using the rgl package.
| Version: |
0.2-22 |
| Depends: |
R (≥ 2.14.0), ape (≥ 3.1-0) |
| Imports: |
mvtnorm (≥ 1.0-0), polyCub (≥ 0.5-0), spatstat (≥ 1.36-0), rgl, sm, methods, grDevices, stats |
| Suggests: |
sp, ggmcmc, rpanel, tcltk |
| Published: |
2016-01-13 |
| Author: |
Ignacio Quintero [aut, cre],
Forrest W. Crawford [aut],
Petr Keil [aut] |
| Maintainer: |
Ignacio Quintero <ignacio.quintero at yale.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| Citation: |
rase citation info |
| Materials: |
README |
| CRAN checks: |
rase results |
Downloads: