Calculates cryptic scores for genes using the ratio
(Cheung et al., 2008), the 3' enrichment method
(DeGennaro et al., 2013) and the probabilistic
method. It also provide methods to estimates
cryptic transcription start sites.
| Version: |
0.99.2 |
| Depends: |
R (≥ 3.2.0) |
| Imports: |
biomaRt (≥ 2.24.1), data.table (≥ 1.9.6), IRanges (≥
2.2.9), mclust (≥ 5.1), MESS (≥ 0.3-2), parallel (≥ 3.2.2), Rcpp (≥ 0.12.1), Rsamtools (≥ 1.20.5) |
| LinkingTo: |
Rcpp |
| Suggests: |
knitr, testthat, rmarkdown |
| Published: |
2016-02-08 |
| Author: |
Nicole Uwimana, Benjamin Haibe-Kains, Francois Robert |
| Maintainer: |
Nicole Uwimana <nicole.uwimana at gmail.com> |
| BugReports: |
https://bitbucket.org/nuwimana/ycrypticrnas/issues |
| License: |
GPL-2 |
| URL: |
https://bitbucket.org/nuwimana/ycrypticrnas |
| NeedsCompilation: |
yes |
| CRAN checks: |
yCrypticRNAs results |