Last updated on 2016-10-24 23:48:07.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 3.78 | 59.26 | 63.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 3.82 | 59.42 | 63.25 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.2 | 115.94 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 113.47 | OK | |||
| r-devel-macos-x86_64-clang | 1.2.2 | 86.61 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.2.2 | 21.00 | 121.00 | 142.00 | OK | |
| r-patched-linux-x86_64 | 1.2.2 | 4.24 | 56.78 | 61.03 | OK | |
| r-patched-solaris-sparc | 1.2.2 | 622.30 | OK | |||
| r-patched-solaris-x86 | 1.2.2 | 139.20 | OK | |||
| r-release-linux-x86_64 | 1.2.2 | 4.42 | 55.80 | 60.23 | OK | |
| r-release-osx-x86_64-mavericks | 1.2.2 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.2.2 | 17.00 | 124.00 | 141.00 | OK | |
| r-oldrel-windows-ix86+x86_64 | 1.2.2 | 22.00 | 130.00 | 152.00 | OK |
Version: 1.2.2
Check: examples
Result: ERROR
Running examples in ‘AFM-Ex.R’ failed
The error most likely occurred in:
> ### Name: evaluateVariogramModels
> ### Title: evaluateVariogramModels method to evaluate the basic variogram
> ### models
> ### Aliases: evaluateVariogramModels
> ### evaluateVariogramModels,AFMImageVariogramAnalysis-method
>
> ### ** Examples
>
> library(AFM)
>
> data("AFMImageOfRegularPeaks")
> # take an extract of the image to fasten the calculation
> AFMImage<-extractAFMImage(AFMImageOfRegularPeaks, 40, 40, 32)
[1] "40 40 31 40 71 40 71"
> # e.g. AFMImage@fullfilename<-"/users/ubuntu/AFMImageOfRegularPeaks-extract.txt"
> AFMImage@fullfilename<-paste(tempdir(), "AFMImageOfRegularPeaks-extract.txt", sep="/")
>
> AFMImageAnalyser<-AFMImageAnalyser(AFMImage)
Warning in data.table(lib = c("AFM", "gstat", "fractaldim", "fftwtools"), :
Item 1 is of size 4 but maximum size is 5 (recycled leaving remainder of 1 items)
>
> # Variogram analysis
> sampleFitPercentage<-3.43/100
> variogramAnalysis<-AFMImageVariogramAnalysis(sampleFitPercentage)
> variogramAnalysis@omnidirectionalVariogram<-
+ AFM::calculateOmnidirectionalVariogram(AFMImage=AFMImage,
+ AFMImageVariogramAnalysis=variogramAnalysis)
[1] "using automatic width of 1"
[1] "calculating omnidirectional variogram using width of 1 ..."
Error in CRS("+init") : no colon in init= string
Calls: <Anonymous> -> CRS
Execution halted
Flavor: r-release-osx-x86_64-mavericks