Last updated on 2016-10-24 23:48:10.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 2.91 | 45.25 | 48.15 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 2.80 | 50.12 | 52.92 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 95.83 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 96.37 | NOTE | |||
| r-devel-macos-x86_64-clang | 1.1 | 70.95 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1 | 12.00 | 93.00 | 105.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1 | 2.98 | 46.33 | 49.31 | NOTE | |
| r-patched-solaris-sparc | 1.1 | 527.10 | NOTE | |||
| r-patched-solaris-x86 | 1.1 | 111.30 | NOTE | |||
| r-release-linux-x86_64 | 1.1 | 2.80 | 48.07 | 50.87 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.1 | 11.00 | 75.00 | 86.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.1 | 12.00 | 92.00 | 104.00 | NOTE |
Version: 1.1
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: ‘parallel’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
DPfitSamples: no visible global function definition for ‘mclapply’
DPfitSamples: no visible global function definition for ‘na.omit’
SampleNMM : nmm: no visible global function definition for ‘dchisq’
SampleNMM : nmm: no visible global function definition for ‘dnorm’
SampleNMM: no visible global function definition for ‘optim’
SampleNMM: no visible global function definition for ‘dchisq’
SampleNMM: no visible global function definition for ‘dnorm’
getAGP: no visible global function definition for ‘na.omit’
getBAFmean: no visible global function definition for ‘quantile’
getBAFmean: no visible global function definition for ‘density’
getBAFmean: no visible global function definition for ‘nls’
getCCF: no visible global function definition for ‘mclapply’
getCCF: no visible global function definition for ‘write.table’
getCanonicalLines: no visible global function definition for ‘lm’
getDPfit: no visible global function definition for ‘pchisq’
getDiploidOrigin: no visible global function definition for ‘mclapply’
getHets: no visible global function definition for ‘runif’
getKmeans: no visible global function definition for ‘kmeans’
getOrigin: no visible global function definition for ‘weighted.mean’
getPloidy: no visible global function definition for ‘weighted.mean’
getSampleAGP: no visible global function definition for ‘png’
getSampleAGP: no visible global function definition for ‘dev.off’
getSampleAGP: no visible global function definition for ‘quantile’
getSampleAGP: no visible global function definition for ‘var’
getSampleCCF: no visible global function definition for ‘read.table’
getSampleCCF: no visible global function definition for ‘quantile’
getSampleCCF : computeSD: no visible global function definition for
‘dbinom’
getSampleCCF: no visible global function definition for ‘pbeta’
getSeg: no visible global function definition for ‘read.table’
getSegChr: no visible global function definition for ‘median’
getSegChr: no visible global function definition for ‘na.omit’
getSegChr.CBS : foo: no visible global function definition for ‘median’
getSegChr.CBS: no visible global function definition for ‘mclapply’
getSegChr.CBS: no visible global function definition for ‘na.omit’
getSegPurity: no visible global function definition for ‘par’
getSegPurity: no visible global function definition for ‘plot’
getSegPurity: no visible global function definition for ‘abline’
getSegPurity: no visible global function definition for ‘points’
getSegPurity : foo: no visible global function definition for ‘lines’
getSegPurity : foo: no visible global function definition for ‘gray’
getSegPurity : foo: no visible global function definition for ‘points’
getSegPurity: no visible global function definition for ‘mclapply’
getSegPurity: no visible global function definition for ‘title’
getsAGP: no visible global function definition for ‘read.table’
getsAGP: no visible global function definition for ‘na.omit’
getsAGP: no visible global function definition for ‘runif’
plotBAFLRR: no visible global function definition for ‘plot’
plotBAFLRR: no visible global function definition for ‘abline’
plotBAFLRR: no visible global function definition for ‘points’
plotBAFLRR: no visible global function definition for ‘lines’
plotIdentifiableZone: no visible global function definition for ‘rgb’
plotIdentifiableZone: no visible global function definition for ‘par’
plotIdentifiableZone: no visible global function definition for ‘plot’
plotIdentifiableZone: no visible global function definition for
‘polygon’
plotIdentifiableZone: no visible global function definition for ‘lines’
plotIdentifiableZone: no visible global function definition for
‘segments’
Undefined global functions or variables:
abline dbinom dchisq density dev.off dnorm gray kmeans lines lm
mclapply median na.omit nls optim par pbeta pchisq plot png points
polygon quantile read.table rgb runif segments title var
weighted.mean write.table
Consider adding
importFrom("grDevices", "dev.off", "gray", "png", "rgb")
importFrom("graphics", "abline", "lines", "par", "plot", "points",
"polygon", "segments", "title")
importFrom("stats", "dbinom", "dchisq", "density", "dnorm", "kmeans",
"lm", "median", "na.omit", "nls", "optim", "pbeta",
"pchisq", "quantile", "runif", "var", "weighted.mean")
importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
DPfitSamples: no visible global function definition for 'mclapply'
getCCF: no visible global function definition for 'mclapply'
getDiploidOrigin: no visible global function definition for 'mclapply'
getSegChr.CBS: no visible global function definition for 'mclapply'
getSegPurity: no visible global function definition for 'mclapply'
Flavor: r-oldrel-windows-ix86+x86_64