CRAN Package Check Results for Package CHAT

Last updated on 2016-10-24 23:48:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 2.91 45.25 48.15 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 2.80 50.12 52.92 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 95.83 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 96.37 NOTE
r-devel-macos-x86_64-clang 1.1 70.95 NOTE
r-devel-windows-ix86+x86_64 1.1 12.00 93.00 105.00 NOTE
r-patched-linux-x86_64 1.1 2.98 46.33 49.31 NOTE
r-patched-solaris-sparc 1.1 527.10 NOTE
r-patched-solaris-x86 1.1 111.30 NOTE
r-release-linux-x86_64 1.1 2.80 48.07 50.87 NOTE
r-release-osx-x86_64-mavericks 1.1 NOTE
r-release-windows-ix86+x86_64 1.1 11.00 75.00 86.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1 12.00 92.00 104.00 NOTE

Check Details

Version: 1.1
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘parallel’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    DPfitSamples: no visible global function definition for ‘mclapply’
    DPfitSamples: no visible global function definition for ‘na.omit’
    SampleNMM : nmm: no visible global function definition for ‘dchisq’
    SampleNMM : nmm: no visible global function definition for ‘dnorm’
    SampleNMM: no visible global function definition for ‘optim’
    SampleNMM: no visible global function definition for ‘dchisq’
    SampleNMM: no visible global function definition for ‘dnorm’
    getAGP: no visible global function definition for ‘na.omit’
    getBAFmean: no visible global function definition for ‘quantile’
    getBAFmean: no visible global function definition for ‘density’
    getBAFmean: no visible global function definition for ‘nls’
    getCCF: no visible global function definition for ‘mclapply’
    getCCF: no visible global function definition for ‘write.table’
    getCanonicalLines: no visible global function definition for ‘lm’
    getDPfit: no visible global function definition for ‘pchisq’
    getDiploidOrigin: no visible global function definition for ‘mclapply’
    getHets: no visible global function definition for ‘runif’
    getKmeans: no visible global function definition for ‘kmeans’
    getOrigin: no visible global function definition for ‘weighted.mean’
    getPloidy: no visible global function definition for ‘weighted.mean’
    getSampleAGP: no visible global function definition for ‘png’
    getSampleAGP: no visible global function definition for ‘dev.off’
    getSampleAGP: no visible global function definition for ‘quantile’
    getSampleAGP: no visible global function definition for ‘var’
    getSampleCCF: no visible global function definition for ‘read.table’
    getSampleCCF: no visible global function definition for ‘quantile’
    getSampleCCF : computeSD: no visible global function definition for
     ‘dbinom’
    getSampleCCF: no visible global function definition for ‘pbeta’
    getSeg: no visible global function definition for ‘read.table’
    getSegChr: no visible global function definition for ‘median’
    getSegChr: no visible global function definition for ‘na.omit’
    getSegChr.CBS : foo: no visible global function definition for ‘median’
    getSegChr.CBS: no visible global function definition for ‘mclapply’
    getSegChr.CBS: no visible global function definition for ‘na.omit’
    getSegPurity: no visible global function definition for ‘par’
    getSegPurity: no visible global function definition for ‘plot’
    getSegPurity: no visible global function definition for ‘abline’
    getSegPurity: no visible global function definition for ‘points’
    getSegPurity : foo: no visible global function definition for ‘lines’
    getSegPurity : foo: no visible global function definition for ‘gray’
    getSegPurity : foo: no visible global function definition for ‘points’
    getSegPurity: no visible global function definition for ‘mclapply’
    getSegPurity: no visible global function definition for ‘title’
    getsAGP: no visible global function definition for ‘read.table’
    getsAGP: no visible global function definition for ‘na.omit’
    getsAGP: no visible global function definition for ‘runif’
    plotBAFLRR: no visible global function definition for ‘plot’
    plotBAFLRR: no visible global function definition for ‘abline’
    plotBAFLRR: no visible global function definition for ‘points’
    plotBAFLRR: no visible global function definition for ‘lines’
    plotIdentifiableZone: no visible global function definition for ‘rgb’
    plotIdentifiableZone: no visible global function definition for ‘par’
    plotIdentifiableZone: no visible global function definition for ‘plot’
    plotIdentifiableZone: no visible global function definition for
     ‘polygon’
    plotIdentifiableZone: no visible global function definition for ‘lines’
    plotIdentifiableZone: no visible global function definition for
     ‘segments’
    Undefined global functions or variables:
     abline dbinom dchisq density dev.off dnorm gray kmeans lines lm
     mclapply median na.omit nls optim par pbeta pchisq plot png points
     polygon quantile read.table rgb runif segments title var
     weighted.mean write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray", "png", "rgb")
     importFrom("graphics", "abline", "lines", "par", "plot", "points",
     "polygon", "segments", "title")
     importFrom("stats", "dbinom", "dchisq", "density", "dnorm", "kmeans",
     "lm", "median", "na.omit", "nls", "optim", "pbeta",
     "pchisq", "quantile", "runif", "var", "weighted.mean")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    DPfitSamples: no visible global function definition for 'mclapply'
    getCCF: no visible global function definition for 'mclapply'
    getDiploidOrigin: no visible global function definition for 'mclapply'
    getSegChr.CBS: no visible global function definition for 'mclapply'
    getSegPurity: no visible global function definition for 'mclapply'
Flavor: r-oldrel-windows-ix86+x86_64