CRAN Package Check Results for Package rmeta

Last updated on 2016-10-24 23:48:31.

Check Details

Version: 2.16
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.16
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘grid’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.16
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     funnelplot.default funnelplot.meta.DSL funnelplot.meta.MH
     funnelplot.meta.summaries plot.meta.DSL plot.meta.MH plot.meta.cum
     plot.meta.summaries print.meta.DSL print.meta.MH print.meta.cum
     print.meta.summaries print.summary.meta.DSL print.summary.meta.MH
     print.summary.meta.cum print.summary.meta.summaries summary.meta.DSL
     summary.meta.MH summary.meta.cum summary.meta.summaries
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.16
Check: R code for possible problems
Result: NOTE
    cummeta: no visible binding for global variable ‘na.fail’
    forestplot: no visible global function definition for ‘plot.new’
    funnelplot.default: no visible global function definition for ‘qnorm’
    funnelplot.default: no visible global function definition for ‘plot’
    funnelplot.default: no visible global function definition for ‘par’
    funnelplot.default: no visible global function definition for
     ‘segments’
    funnelplot.default: no visible global function definition for ‘abline’
    funnelplot.default: no visible global function definition for ‘points’
    meta.DSL: no visible binding for global variable ‘na.fail’
    meta.DSL: no visible global function definition for ‘pchisq’
    meta.MH: no visible binding for global variable ‘na.fail’
    meta.MH: no visible global function definition for ‘pchisq’
    meta.colors: no visible global function definition for ‘par’
    meta.summaries: no visible binding for global variable ‘na.fail’
    meta.summaries: no visible global function definition for ‘pchisq’
    metaplot: no visible global function definition for ‘qnorm’
    metaplot: no visible global function definition for ‘par’
    metaplot: no visible global function definition for ‘plot’
    metaplot: no visible global function definition for ‘axis’
    metaplot: no visible global function definition for ‘abline’
    metaplot: no visible global function definition for ‘lines’
    metaplot: no visible global function definition for ‘text’
    metaplot: no visible global function definition for ‘rect’
    metaplot: no visible global function definition for ‘polygon’
    plot.meta.cum: no visible global function definition for ‘title’
    plot.meta.cum: no visible global function definition for ‘abline’
    plot.meta.cum: no visible global function definition for ‘qnorm’
    print.meta.DSL: no visible global function definition for ‘qnorm’
    print.meta.MH: no visible global function definition for ‘qnorm’
    print.meta.summaries: no visible global function definition for ‘qnorm’
    summary.meta.DSL: no visible global function definition for ‘qnorm’
    summary.meta.MH: no visible global function definition for ‘qnorm’
    summary.meta.cum: no visible global function definition for ‘qnorm’
    summary.meta.summaries: no visible global function definition for
     ‘qnorm’
    Undefined global functions or variables:
     abline axis lines na.fail par pchisq plot plot.new points polygon
     qnorm rect segments text title
    Consider adding
     importFrom("graphics", "abline", "axis", "lines", "par", "plot",
     "plot.new", "points", "polygon", "rect", "segments", "text",
     "title")
     importFrom("stats", "na.fail", "pchisq", "qnorm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.16
Check: Rd files
Result: NOTE
    prepare_Rd: meta.MH.Rd:55: Dropping empty section \references
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.16
Check: Rd line widths
Result: NOTE
    Rd file 'forestplot.Rd':
     \examples lines wider than 100 characters:
     c("","OR",format(exp(steroid$logOR),digits=2),NA,format(exp(steroid$logMH),digits=2))
    
    Rd file 'meta.cum.Rd':
     \usage lines wider than 90 characters:
     NULL, subset = NULL, na.action = na.fail, method = c("meta.MH", "meta.DSL"), statistic = "OR")
     cummeta.summaries(effects,stderrs, conf.level = 0.95, names = NULL,weights=NULL, data= NULL, subset = NULL, na.action = get(getOption(" ... [TRUNCATED]
     summary.line = TRUE, summary.conf = FALSE, main="Cumulative meta-analysis", lwd=1, ...)
     \examples lines wider than 100 characters:
     steroid<-cummeta(n.trt,n.ctrl,ev.trt,ev.ctrl,names=name,data=cochrane,statistic="RR",method="meta.MH")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.16
Check: R code for possible problems
Result: NOTE
    plot.meta.cum: warning in qnorm((1 - conf.level)/2, s = ses[m]):
     partial argument match of 's' to 'sd'
Flavor: r-oldrel-windows-ix86+x86_64