CRAN Package Check Results for Package wordspace

Last updated on 2016-10-24 23:48:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2-0 17.05 59.00 76.05 OK
r-devel-linux-x86_64-debian-gcc 0.2-0 18.15 56.16 74.31 OK
r-devel-linux-x86_64-fedora-clang 0.2-0 162.72 OK
r-devel-linux-x86_64-fedora-gcc 0.2-0 158.64 OK
r-devel-macos-x86_64-clang 0.2-0 119.58 OK
r-devel-windows-ix86+x86_64 0.2-0 63.00 165.00 228.00 OK
r-patched-linux-x86_64 0.2-0 16.42 55.04 71.46 OK
r-patched-solaris-sparc 0.2-0 766.10 ERROR
r-patched-solaris-x86 0.2-0 172.50 ERROR
r-release-linux-x86_64 0.2-0 16.52 54.81 71.33 OK
r-release-osx-x86_64-mavericks 0.2-0 OK
r-release-windows-ix86+x86_64 0.2-0 58.00 119.00 177.00 OK
r-oldrel-windows-ix86+x86_64 0.2-0 62.00 201.00 263.00 OK

Check Details

Version: 0.2-0
Check: tests
Result: ERROR
    Running the tests in ‘tests/dsm_projection.R’ failed.
    Last 13 lines of output:
     > svd.R <- svd(M1, nu=3, nv=3)
     > proj.R <- svd.R$u %*% diag(svd.R$d[1:3]) # projection into SVD space
     > proj.ws <- dsm.projection(M1, method="svd", n=3)
     > proj.ws.sparse <- dsm.projection(M2, method="svd", n=3)
    
     *** caught segfault ***
     address b, cause 'memory not mapped'
    
     Traceback:
     1: .Call(svdLAS2_, dim(M), M@i, M@p, M@x, as.integer(rank), as.double(tol * c(-1, 1)), as.double(kappa))
     2: sparsesvd(M, rank = n)
     3: dsm.projection(M2, method = "svd", n = 3)
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-sparc

Version: 0.2-0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning: It seems you should call rmarkdown::render() instead of knitr::knit2html() because wordspace-intro.Rmd appears to be an R Markdown v2 document.
    Loading required package: Matrix
    
     *** caught segfault ***
    address 8, cause 'memory not mapped'
    
    Traceback:
     1: .Call(svdLAS2_, dim(M), M@i, M@p, M@x, as.integer(rank), as.double(tol * c(-1, 1)), as.double(kappa))
     2: sparsesvd(M, rank = n)
     3: dsm.projection(VObj, method = "svd", n = 300)
     4: eval(expr, envir, enclos)
     5: eval(expr, envir, enclos)
     6: withVisible(eval(expr, envir, enclos))
     7: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     8: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
     9: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler)
    10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    11: in_dir(opts_knit$get("root.dir") %n% input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    12: block_exec(params)
    13: call_block(x)
    14: process_group.block(group)
    15: process_group(group)
    16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    17: process_file(text, output)
    18: knit(input, text = text, envir = envir, encoding = encoding, quiet = quiet)
    19: (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", file)) knit2pdf else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv())
    20: vweave(...)
    21: engine$weave(file, quiet = quiet, encoding = enc)
    22: doTryCatch(return(expr), name, parentenv, handler)
    23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    24: tryCatchList(expr, classes, parentenv, handlers)
    25: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    26: buildVignettes(dir = "/home/ripley/R/packages/tests32/wordspace.Rcheck/vign_test/wordspace")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-sparc

Version: 0.2-0
Check: tests
Result: ERROR
    Running the tests in ‘tests/dsm_projection.R’ failed.
    Last 13 lines of output:
     > svd.R <- svd(M1, nu=3, nv=3)
     > proj.R <- svd.R$u %*% diag(svd.R$d[1:3]) # projection into SVD space
     > proj.ws <- dsm.projection(M1, method="svd", n=3)
     > proj.ws.sparse <- dsm.projection(M2, method="svd", n=3)
    
     *** caught segfault ***
     address 6, cause 'memory not mapped'
    
     Traceback:
     1: .Call(svdLAS2_, dim(M), M@i, M@p, M@x, as.integer(rank), as.double(tol * c(-1, 1)), as.double(kappa))
     2: sparsesvd(M, rank = n)
     3: dsm.projection(M2, method = "svd", n = 3)
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 0.2-0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning: It seems you should call rmarkdown::render() instead of knitr::knit2html() because wordspace-intro.Rmd appears to be an R Markdown v2 document.
    Loading required package: Matrix
    
     *** caught segfault ***
    address 85b, cause 'memory not mapped'
    
    Traceback:
     1: .Call(svdLAS2_, dim(M), M@i, M@p, M@x, as.integer(rank), as.double(tol * c(-1, 1)), as.double(kappa))
     2: sparsesvd(M, rank = n)
     3: dsm.projection(VObj, method = "svd", n = 300)
     4: eval(expr, envir, enclos)
     5: eval(expr, envir, enclos)
     6: withVisible(eval(expr, envir, enclos))
     7: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     8: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
     9: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
    10: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
    11: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    12: in_dir(opts_knit$get("root.dir") %n% input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    13: block_exec(params)
    14: call_block(x)
    15: process_group.block(group)
    16: process_group(group)
    17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    18: process_file(text, output)
    19: knit(input, text = text, envir = envir, encoding = encoding, quiet = quiet)
    20: (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", file)) knit2pdf else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv())
    21: vweave(...)
    22: engine$weave(file, quiet = quiet, encoding = enc)
    23: doTryCatch(return(expr), name, parentenv, handler)
    24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    25: tryCatchList(expr, classes, parentenv, handlers)
    26: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    27: buildVignettes(dir = "/home/ripley/R/packages/tests32/wordspace.Rcheck/vign_test/wordspace")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86