bold 0.3.5
MINOR IMPROVEMENTS
- Added more tests to the test suite (#28)
BUG FIXES
- Fixed a bug in an internal data parser (#27)
bold 0.3.4
NEW FEATURES
MINOR IMPROVEMENTS
- Switched to
xml2 from XML as the XML parser for this package (#26)
- Fixes to
bold_trace() to create dir and tar file when it doesn't already exist
BUG FIXES
- Fixed odd problem where sometimes resulting data from HTTP request was garbled on
content(x, "text"), so now using rawToChar(content(x)), which works (#24)
bold 0.3.0
MINOR IMPROVEMENTS
- Explicitly import non-base R functions (#22)
- Better package level manual file
bold 0.2.6
MINOR IMPROVEMENTS
sangerseqR package now in Suggests for reading trace files, and is only used in bold_trace() function.- General code tidying, reduction of code duplication.
bold_trace() gains two new parameters: overwrite to choose whether to overwrite an existing file of the same name or not, progress to show a progress bar for downloading or not.bold_trace() gains a print method to show a tidy summary of the trace file downloaded.
BUG FIXES
- Fixed similar bugs in
bold_tax_name() (#17) and bold_tax_id() (#18) in which species that were missing from the BOLD database returned empty arrays but 200 status codes. Parsing those as failed attempts now. Also fixes problem in taxize in bold_search() that use these two functions.
bold 0.2.0
NEW FEATURES
- Package gains two new functions for working with the BOLD taxonomy APIs:
bold_tax_name() and bold_tax_id(), which search for taxonomic data from BOLD using either names or BOLD identifiers, respectively. (#11)
- Two new packages in Imports:
jsonlite and reshape.
MINOR IMPROVEMENTS
- Added new taxonomy API functions to the vignette (#14)
- Added reference URLS to all function doc files to allow easy reference for the appropriate API docs.
callopts parameter changed to ... throughout the package, so that passing on options to httr::GET is done via named parameters, e.g., config=verbose(). (#13)- Added examples of doing curl debugging throughout man pages.
bold 0.1.2
MINOR IMPROVEMENTS
- Improved the vignette (#8)
- Added small function to print helpful message when user inputs no parameters or zero length parameter values.
BUG FIXES
- Fixed some broken tests with the new
httr (v0.4) (#9), and added a few more tests (#7)
bold 0.1.0
NEW FEATURES