gkmSVM: Gapped-Kmer Support Vector Machine

Imports the 'gkmSVM' v2.0 functionalities into R (www.beerlab.org/gkmsvm). It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms.

Version: 0.71.0
Imports: Rcpp, kernlab, seqinr, utils, ROCR, grDevices, graphics, stats, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, rtracklayer
LinkingTo: Rcpp
Suggests: BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked
Published: 2016-07-19
Author: Mahmoud Ghandi
Maintainer: Mahmoud Ghandi <mghandi at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: gkmSVM results


Reference manual: gkmSVM.pdf
Package source: gkmSVM_0.71.0.tar.gz
Windows binaries: r-devel: gkmSVM_0.71.0.zip, r-release: gkmSVM_0.71.0.zip, r-oldrel: gkmSVM_0.71.0.zip
OS X Mavericks binaries: r-release: gkmSVM_0.71.0.tgz, r-oldrel: gkmSVM_0.71.0.tgz
Old sources: gkmSVM archive


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