Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls.
| Version: | 1.0 |
| Imports: | stats, multtest |
| Published: | 2015-08-26 |
| Author: | Jan Budczies |
| Maintainer: | Jan Budczies <jan.budczies at charite.de> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | ioncopy results |
| Reference manual: | ioncopy.pdf |
| Package source: | ioncopy_1.0.tar.gz |
| Windows binaries: | r-devel: ioncopy_1.0.zip, r-release: ioncopy_1.0.zip, r-oldrel: ioncopy_1.0.zip |
| OS X Mavericks binaries: | r-release: ioncopy_1.0.tgz, r-oldrel: ioncopy_1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=ioncopy to link to this page.