r.jive: Perform JIVE Decompositions for Multi-Source Data

Performs the JIVE decompositions on a list of data sets when the data share a dimension, returning low-rank matrices that capture the joint and individual structure of the data. It provides two methods of rank selection when the rank is unknown, a permutation test and a BIC selection algorithm. Also included in the package are three plotting functions for visualizing the variance attributed to each data source: a bar plot that shows the percentages of the variability attributable to joint and individual structure, a heatmap that shows the structure of the variability, and principal component plots.

Version: 1.7
Depends: R (≥ 2.10.0)
Imports: SpatioTemporal, gplots, graphics, stats
Suggests: knitr, rmarkdown
Published: 2016-07-25
Author: Michael J. O'Connell and Eric F. Lock
Maintainer: Michael J. O'Connell <oconn725 at umn.edu>
License: GPL-3
NeedsCompilation: no
CRAN checks: r.jive results


Reference manual: r.jive.pdf
Vignettes: Example with TCGA Data
Package source: r.jive_1.7.tar.gz
Windows binaries: r-devel: r.jive_1.7.zip, r-release: r.jive_1.7.zip, r-oldrel: r.jive_1.7.zip
OS X Mavericks binaries: r-release: r.jive_1.7.tgz, r-oldrel: r.jive_1.7.tgz
Old sources: r.jive archive


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