Performs the JIVE decompositions on a list of data sets when the data share a dimension, returning low-rank matrices that capture the joint and individual structure of the data. It provides two methods of rank selection when the rank is unknown, a permutation test and a BIC selection algorithm. Also included in the package are three plotting functions for visualizing the variance attributed to each data source: a bar plot that shows the percentages of the variability attributable to joint and individual structure, a heatmap that shows the structure of the variability, and principal component plots.
| Version: | 1.7 |
| Depends: | R (≥ 2.10.0) |
| Imports: | SpatioTemporal, gplots, graphics, stats |
| Suggests: | knitr, rmarkdown |
| Published: | 2016-07-25 |
| Author: | Michael J. O'Connell and Eric F. Lock |
| Maintainer: | Michael J. O'Connell <oconn725 at umn.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | r.jive results |
| Reference manual: | r.jive.pdf |
| Vignettes: |
Example with TCGA Data |
| Package source: | r.jive_1.7.tar.gz |
| Windows binaries: | r-devel: r.jive_1.7.zip, r-release: r.jive_1.7.zip, r-oldrel: r.jive_1.7.zip |
| OS X Mavericks binaries: | r-release: r.jive_1.7.tgz, r-oldrel: r.jive_1.7.tgz |
| Old sources: | r.jive archive |
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