rehh: Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Functions for the detection of footprints of selection on
dense SNP data using Extended Homozygosity Haplotype (EHH)
based tests. The package includes computation of EHH, iHS
(within population) and Rsb or XP-EHH (across pairs of populations)
statistics. Various plotting functions are also included to
facilitate visualization and interpretation of the results.
| Version: |
2.0.0 |
| Depends: |
R (≥ 2.10), gplots, methods |
| Suggests: |
knitr, rmarkdown |
| Published: |
2016-08-01 |
| Author: |
Mathieu Gautier, Alexander Klassmann and Renaud Vitalis |
| Maintainer: |
Mathieu Gautier <mathieu.gautier at supagro.inra.fr> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| Citation: |
rehh citation info |
| Materials: |
ChangeLog |
| CRAN checks: |
rehh results |
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